Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00582 ATGGTGCACCTCTCAACCAACAATGCTACCAAACTCTTGTCCAAGTTAGCCCAAGGGAACGGCCATGGCGAGGATTCGCCATATTTTGATGGCTGGAAGGCTTATGACACTGACCCATTTCATCCAACAATGAATCCTCGTGGGGTTATTCAAATGGGTTTGGCTGAAAATCAGCTTTCTTTTGAATTCGTGGAGAAATGGATTAAAAACAATCCAAAAGCTTCCATTTGTAGCGTTGAAGGAGTTCATGAGTTTAAAGACATAGCCATCTTCCAGGATTACCATGGATTGCCACAGTTCAGAAATGCGGTGGCGAATTTCATGGCGAAAGTGAGAGGCAATCGAGTACAATTTGATCCAGACCGTGTTGTTATGAGTGGTGGAGCTACTGGAGCTCATGAAACGGTGGCGTTTTGTTTGGCTAATCCTGGTGAAGCATTTCTTGTTCCTGTTCCTTATTATCCAGGATTTGATAGAGATCTGAGGTGGCGAACCGGAGTCAAAATTGTTCCAGTAATTTGTGAAAGCTCAAACAACTTCAAACTGACAAGAGAAGCCATGGAAACAGCTTACGTGGAAGCTGAAAAATCTGGCATAAAAGTCAAAGGCTTACTTATAACCAATCCTTCAAATCCACTTGGCACAGTATACGACAAAAAAACGCTCGAAACTGCTGTTACATTCATCAATGAAAAGAACATACATTTGGTGTGCGATGAAATCTATGCTGCCACTGTCTTTGCAGAGCCTGGCTTCATTAGTATCTCCGAAGTGATTGAAAACGACACTGAATGCGATAAGAATCTTATCCATGTTGTTTATAGCCTCTCCAAGGATATGGGATTCCCTGGATTTCGTGTTGGCATTATCTACTCTTACAATGATGCTGTCGTGGCTTGCGCTCGTAAGATGTCGAGCTTCGGCCTTGTCTCGTCGCAGACACAATATTTGATTGCGTCGATGTTGTCTGATGATGCGTTTGTCGATCGCTTCCTTGCTGGGAGTGCCGAGAAGCTTGCTACACGTCACCGAAACTTTACCAAAGGACTTGCTCAGGTTGGAATTGGATATTTGAAAGGAAGTGGGGGGTTGTTCTTGTGGATGGATTTGCGACATCTTTTGAAAGAGAAGACATTGGAAGCAGAAATGACACTATGGAGGGTGATAATCAACGACGTTAAACTAAACGTGTCGCCCGGTTCGTCGTTCCACTGCTCGGAGCCAGGGTGGTTCAGGGTTTGCTTTGCAAACATGGACGACAACACAATGGACATCTCCATAACAAGAATTAGAAACTTTGTGCTACAAAACAAGGAGGTAGCCAAGGTTAAGAAACAAAAATTCTGTTGGCGCCAAAGTAGCCTCGAGCTTCGATTGTCGTCTCGAAGGCTTGAAGATATCATGTCGCCACACTCGCCATTGCCTCAGTCTCCAATGCTCCGAGCAACGACTTAA 1455 44.33 MVHLSTNNATKLLSKLAQGNGHGEDSPYFDGWKAYDTDPFHPTMNPRGVIQMGLAENQLSFEFVEKWIKNNPKASICSVEGVHEFKDIAIFQDYHGLPQFRNAVANFMAKVRGNRVQFDPDRVVMSGGATGAHETVAFCLANPGEAFLVPVPYYPGFDRDLRWRTGVKIVPVICESSNNFKLTREAMETAYVEAEKSGIKVKGLLITNPSNPLGTVYDKKTLETAVTFINEKNIHLVCDEIYAATVFAEPGFISISEVIENDTECDKNLIHVVYSLSKDMGFPGFRVGIIYSYNDAVVACARKMSSFGLVSSQTQYLIASMLSDDAFVDRFLAGSAEKLATRHRNFTKGLAQVGIGYLKGSGGLFLWMDLRHLLKEKTLEAEMTLWRVIINDVKLNVSPGSSFHCSEPGWFRVCFANMDDNTMDISITRIRNFVLQNKEVAKVKKQKFCWRQSSLELRLSSRRLEDIMSPHSPLPQSPMLRATT 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3012078 3013989 + CmaCh16G005820.1 Cma16g00582 311180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00582 484 Pfam Aminotransferase class I and II 50 430 IPR004839 GO:0009058|GO:0030170
Cma16g00582 484 Gene3D - 72 324 IPR015421 GO:0003824
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 52 78 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 85 101 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 122 142 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 165 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 198 222 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 234 257 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 269 293 - -
Cma16g00582 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 301 324 - -
Cma16g00582 484 SUPERFAMILY PLP-dependent transferases 22 434 IPR015424 -
Cma16g00582 484 Gene3D Aspartate Aminotransferase, domain 1 38 429 IPR015422 GO:0003824
Cma16g00582 484 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 6 445 - -
Cma16g00582 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 445 - -
Cma16g00582 484 CDD AAT_like 91 431 - -
Cma16g00582 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 275 288 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00582 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - csv:101212728 893.264
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00582 Cma-Chr16:3012078 Cma17g00456 Cma-Chr17:2729331 0 dispersed
Cma16g00582 Cma-Chr16:3012078 Cma04g00726 Cma-Chr4:3694549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00582 Cma_Chr16 FPKM 0.978694 0.858716 0.181256 0.222406 0.0 0.0 0.0 0.0 0.0 0.0