Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00583 ATGCCGGCAACAGAATACCAAGGCTCCTTCCTTGGCCGAATCAGCATCCGTAGAAACCAAGTCATCTCCATGGACGGCACTCACGAGCAGGAGCTTGAGGATCTCGAGCTTTTTCAGAAGCAGGTTTCCGAGCGGTTTTCCGATTTACTAACTCCTCCGCCGTCCGATGACGTTTCTTCCGATCCTATCCTCTCCATCGCCTGGCTTAGAAAGCTTCTCGATTACTTCCTCTGCTGCGAGGCTCAATTTAAGGCACTCCTCATTATGAGCCGCGATCCTTCTCAGATTGTTAAGCCCCCTCTCGATCGTCTCGTCCCGGAATTTCTCGATCGTGTTGTTAAAGCTTTGGATATCTGTAATGCCGTTCTCCACGGGATTGAATCGGTCCGAAAGTTTCAGAAAGTCGCTGAAATCGCGATTTCCGCTCTCGATCAGCGCCCGATTGGGGACGGACAGGTTAAACGAGCGCGTAGGGCTTTGAATTCGTTGATTACTTCCATGGCTGTTGAGGATAAGGATTTTACCAACAGTAAATCGACTGAGAGGGCTTGGTCTTTCGGCCGTCGTGGAAGTGGTGCTCCTGGCACCGGTACCGCCACACCGCAGCATAAGGACCGAATCGCAGGGCAATTTCGGTCTCTGTCATGGAGTATGGCGAAAGGATGGTCCGCGGCAAAGCAGATTCAAGCGATGTTGTCGAATCTGGTAGCGCCGCGCGGTGGTGAGTCGTCTAGTTTGCCGCAGACTGTTTATCTAATGAGTACGGTTTTGGTGTTCGTAATGTGGACTCTAGTTGCAGCGCTGCCTTGCCAGGAGAGAGGCGGCCTGCCGACGAACTTTCCGGTGCCGAAGCAGTTGAGTTGGGCGCAATCGATGATCGGACTACAGGAGAAAATCGCAGACGAATGGAAAAAGAAGGAGAAGAAAGGAAGTGCTGGATTGTTAGAAGAGATGCAACGGATGGAGAAACTGAGTCAATCGTTGATCGAATTCACAGATTCATTCGCATTCCCGTTGGAAGGGGAGCGGCTGGAGGAGGTGGCGGGGATGACGGCGGAACTGGCGGAGACGTGCAAGAAACTGGAGGAGGGATTAGTGCCTTTACAGCAACAAATCAGAGAAGTTTTTCACAGAGTCGTGAGAAGCAGGACAGAGATTCTTGAGCTTTTGGAGTTTACTGCAAAAGCAACCTCGCCAATTGGGTAA 1206 51.49 MPATEYQGSFLGRISIRRNQVISMDGTHEQELEDLELFQKQVSERFSDLLTPPPSDDVSSDPILSIAWLRKLLDYFLCCEAQFKALLIMSRDPSQIVKPPLDRLVPEFLDRVVKALDICNAVLHGIESVRKFQKVAEIAISALDQRPIGDGQVKRARRALNSLITSMAVEDKDFTNSKSTERAWSFGRRGSGAPGTGTATPQHKDRIAGQFRSLSWSMAKGWSAAKQIQAMLSNLVAPRGGESSSLPQTVYLMSTVLVFVMWTLVAALPCQERGGLPTNFPVPKQLSWAQSMIGLQEKIADEWKKKEKKGSAGLLEEMQRMEKLSQSLIEFTDSFAFPLEGERLEEVAGMTAELAETCKKLEEGLVPLQQQIREVFHRVVRSRTEILELLEFTAKATSPIG 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3017620 3018825 - CmaCh16G005830.1 Cma16g00583 311181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00583 401 PANTHER OS02G0109200 PROTEIN 1 396 - -
Cma16g00583 401 PANTHER BPS1-LIKE PROTEIN 1 396 - -
Cma16g00583 401 MobiDBLite consensus disorder prediction 185 204 - -
Cma16g00583 401 Pfam Protein ROH1-like 1 390 IPR008511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00583 - - - csv:101212488 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02454 Cma-Chr4:16869227 Cma16g00583 Cma-Chr16:3017620 7.04E-104 dispersed
Cma09g01120 Cma-Chr9:6186121 Cma16g00583 Cma-Chr16:3017620 8.05E-110 dispersed
Cma15g00591 Cma-Chr15:2799010 Cma16g00583 Cma-Chr16:3017620 1.51E-104 dispersed
Cma16g00583 Cma-Chr16:3017620 Cma04g00728 Cma-Chr4:3704103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g37 Blo02g01119 Blo03g00221 Bda06g00118 . Bpe05g00657 Bpe07g00100 . . . Cmo16g00633 . . . . . Cpe14g00494 . . . . . . . . Cla07g00758 Cam07g0813 Cec07g0871 Cco07g0848 Clacu07g0791 Cmu07g0798 Cre07g1154 Cone8ag0279 Cone12ag0285 . Cone9ag0804 . . . Cme07g01618 . . . . . . Bma05g00830 . . . . . Cma16g00583 . . . . . . . . . . . . . . . . . . . Csa04g00607 Chy07g01205 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005485 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00583 Cma_Chr16 FPKM 0.968491 0.9955 2.505031 2.577269 4.760232 5.260624 4.304167 0.649942 0.4557 0.658393