Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00586 ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAGACAGCAAGAAAGATGCCAGACTACCTTGTCTGGCATTGCTGCATCCAAGACTACTACTACTACACCCAGGTTTACGCCTGCTCCAGCCGCTTCAAGACCTCCGGCTCCTGCCATAAAATTTTCAAATGACACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTTCTGGAGACAAGACAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAAGCTGTCTTTGATAGTTTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAAGCGTTATGGAAGATTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAATGATCCTCGAATTCAAATCAAAGTAGACGATGATCTGAAGCAACTGTTTCGGGAAATTGAATTACCTCGTGATATGCTCGATGTCGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCTACCAACACTGCAAAGAGGCGAGCCAATGCACAAAATGTGGCGTCCTCGAAACCAAAGCCGAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCACATCTTCCGGAGCTCTTCAAGAATTAA 825 43.39 MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAASRPPAPAIKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3025406 3030691 + CmaCh16G005860.1 Cma16g00586 311184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00586 274 Pfam TFA2 Winged helix domain 2 133 190 IPR040501 -
Cma16g00586 274 MobiDBLite consensus disorder prediction 221 274 - -
Cma16g00586 274 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 274 IPR016656 GO:0005673|GO:0006367
Cma16g00586 274 MobiDBLite consensus disorder prediction 226 246 - -
Cma16g00586 274 PANTHER BNAA02G21830D PROTEIN 1 274 - -
Cma16g00586 274 Pfam TFIIE beta subunit core domain 72 131 IPR003166 GO:0006367
Cma16g00586 274 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 58 133 IPR003166 GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00586 K03137 TFIIE2, GTF2E2, TFA2; transcription initiation factor TFIIE subunit beta - csv:101211845 488.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00586 Cma-Chr16:3025406 Cma04g00730 Cma-Chr4:3709107 1.66E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g357 . . . . . . . . . Cmo16g00635 . . . . . Cpe14g00496 . . . . . . . . Cla07g00760 Cam07g0816 Cec07g0876 Cco07g0851 Clacu07g0794 Cmu07g0802 Cre07g1156 . . . . . . . . . . . . . . . . . . . . Cma16g00586 . . . . . . . . . . . . . . . . . . . . Chy07g01207 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006900 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00586 Cma_Chr16 FPKM 32.405861 35.97279 30.16433 31.656073 32.898548 27.690588 33.948509 39.476719 36.585732 37.150478