Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00588 ATGTTCAAGTCGGCGAGGTGGAGGAGTGAGAAGAACAGGATCAAGGCTGAGTTCAAATTGCAATTCTGTGCGACTCAGATATCTGAATTTGGCGGTGATTCATTGACGATATCTGTGGTTCCTGGTGATGTGGGGAAGCCGACGCTGAAACTGGAAAAGGCGACAGTGCGAGGAGGAAAATGTCGGTGGGAGAATCCTGCTTATGTAACAGTTAAGTTTGATACAGACCAGAGAACTGGAAAGTTGACTGAGAAAATCTACCATTTTCGAGTCTCTACGGGATTGACCAAAGCTGGTTTACTTGGTGAAGTTTCTATTGATTTTGCTAAATATGCTGAAACCACCAAGCCTTTCTCTGCTTCTCTTCCCCTCCACAATTCAAATTCTGCAGTTTTGCATATTTGGATACAGAGGATTCAGGAAGATGCTGCTCAGAGAGATTTGGAAGAGTTTGAGGACTCAAAAACTAGATCTCAAGATGAGAGCTTAAGCAGCTACTTGAACAACGAGGATATGAACAAGAACAGTCAAACTGAAGTGGGATTGCTTCCTCAATACGCCAAAAATGATGGGTTGAATGATGAAGCTGAAAGAAATGGTGATCATAGAACATCAAGTGGATCAGACAGTACAGTTTCAAGTTATGAGAGTAGCTCTGGACTTGACAGTCCAGTAGGAAATGGGATTAGGAACAACACCCATCAGCAACGTAATGGCTTTCTTTCACCATTAAGCCACGCCCCAGATTCTCACAAATCACCTGCTCGTGAAGAGAATCATGCATTCCCGTGGAAATGGTCGGTTCAATCTGATCAAACCGATGATTCGGGAGTCAATGGCATTGTAGGAGGGAGGTCCAAAAAGGAAACTGATACTGAGAATGAGGAACTTAAGAATGAGCTTTCTGTGTTGAGCAGACGAGCAGACATGTCAGATATGGAGTTGCAGACGCTTCGTAAACAGATTGCAAAAGAGAATAAGAGGAGCCATGATCTTATGAGTGAGGTTTCTAGCTTGAAAGCGGAGAGAGATGAATGGAGAGCAGAATGTGAAAAGTTGAAGGGCTTTCAAAGGCACACGGATGATGCAAAAGTTAAAAACAAGTTGCAGTTTGAACATGGGGATCTGCGGTCTCTTATAGATGAAATGAGACAAGAATTGAATTATGAGAAAGACTTGAATGCCAATCTCCGGTTACAGCTACAGAAAACGCAAGAATCGAATACCGAGTTGATTTTAGCGGTACAAGATCTCGAGGAGATGCTGGAGCAGAAAAACTGTGAAATATCAGAGGCCAAGAAGGCTGAAGAAGAGGATGATGAGCTAAAAGCACTTGAAGATCTTGTGAAGGATCAAAAGAATGATAGAAAAACATATGAACTGGAGCAAAAAGTGATGGAACTCTACGATGAAATCGAGCTGCATATGAGAGATAAGGACGAGATAGCGATACAAACGGAGCAGCTTGCGCTTGATTATGAGATATTGAAACAGGAAAACCATGATCTTTCCTGTAAACTGGAGCAATGTCAACTTCAGGAGCAACTAAAGATCCAGCATGAGCGCTCCTCTTCCGCTGCTGCTATGATAAATGAGCTTGAAAAGAAGATTGAGGGTCTCGAAAACGAGCTTAAACAGCAGTCGGCTGATTATTCCAATACTTCTGCTACAATCAGGGAACTTCAATCCCATGTCAGAAGTTTGGAGGAAGAACTTGAGAAGCAGGGGCAAGATTTCGAAGCTGACTTGGAGGCGATGACGGTTTCCAAGGTCGAGCAAGAGCAAAGAGCTATCCGAGCGGAAGAAGCTTTAAGAAAAATGAGGTTGAGAAATGCTCATACTGCAGAAAAGCTTCAGGAGGAATTTGGAAGGCTGTCCAAGCAGATGGCTTCTACATTTGAGGCAAATGAGAATGTGGCTATGAAAGCACTAGCAGAAGCTAGTGAGCTTCGCTCACAGAGAACTAACTTGGAAGAAGCTCTCCAGAAAGCAAATGAAGAGCTACGATCCGTGAGAGAAAAATTGCATGAACTTTCTCATCAAATCAAGAGCAACTCAACTCAGATAGAACAAATGACATCAGAACTCGAGACTAAGTCCAAACAACTCGAACACCAGGATAAGAAGTCTGAATCGTTCTCTCAGGAGATCCAAATGCTTAAATCCGAGATCGACCGACTTGTGGGAGAGAATAGCAATCTTAAAAAACAAGCTGGACAGGTAGAGACTATGAGAGTAGATTTAGCTCAAGTGACGACGTTAGCTAGAGAAGCCGAGATGCTAATCCAAACAAGAAATACTGAAAGAAACGAGCTGGAGAGCAAGGTTATATCGGCGAAGAAAGAATCTGACAAACTCCTGGATGAGTTAGAGAAACTGAGGAACATGAAAGATGAAAAGGAGAGTTTGCTAGAACTTCTACAGGCAGAGTTTCAGAAGCTCAAAGTTGAATGCAATGACTTAAAGCATTCTTTGGCTGAGGATGAGATAGAGAAAGAGAAACTTAGAAAGCAGATATTGCAGCTGAAAGCTGAGCTGAAGAAGGAGGAGGCCTCTAACAGTTCTGAGAAAAAGCTCAGGCATAACAATGGACGTGTGGCTGCAACTATTGGTGGAAACAAAACTGCTCCAAAACCAAAGCTAAATTCAGCTTCTCATGGACCTGCTGAAGTTGCTAATTTGAGGGAGAAAATCAAAACGCTCGAGATAACCAACGGTAGAAACGACACCGCTTCGCATGGTGGAACGTTCGAGAAGACGAGACAGAGAGCAGACAACTCAAGCAATAATGGCAATGAATTATCAGTCAATAGCAACACGAACTCGTTCAAAACCGCTCCAACGGTTGGCGATAGCAATGGCAACCTTGATGAACTGCTGACAGAATTGTCATCATTAAAAGAGAAGAACCAATCAATGGAAAATGAACTGAAGGATATGCAAGAGAGATACTCAGAGATAAGTCTCAAGTTTGCAGAGGTAGAAGACCGGCTGCAGCAGAATTCCACAACCCCTATAAATCCAGAGCTCCTTTCAAAGCAATTTCTCAGTTCAATTGAATCGAAGAATCAACGTTTCCGATCAAAAGCAGAGGCGGAGGGGAGTATTCTGATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCTCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCATCGAAGAATTGACGAAGAGATCTTGGATGATTGCGATGCATAGCAAGAAGAGGATGCTTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTGATCGGATTGATCTTCCATGAAACTACCACCGCCGCTTCCGCTTCCGCTTCCGCCGCCGGCGACCTTCCTGAAAGTGAAACTATGTCCATTCCCCTGGAGATGAGGCCGTTCTTGCAGTCCTGA 3510 43.85 MFKSARWRSEKNRIKAEFKLQFCATQISEFGGDSLTISVVPGDVGKPTLKLEKATVRGGKCRWENPAYVTVKFDTDQRTGKLTEKIYHFRVSTGLTKAGLLGEVSIDFAKYAETTKPFSASLPLHNSNSAVLHIWIQRIQEDAAQRDLEEFEDSKTRSQDESLSSYLNNEDMNKNSQTEVGLLPQYAKNDGLNDEAERNGDHRTSSGSDSTVSSYESSSGLDSPVGNGIRNNTHQQRNGFLSPLSHAPDSHKSPAREENHAFPWKWSVQSDQTDDSGVNGIVGGRSKKETDTENEELKNELSVLSRRADMSDMELQTLRKQIAKENKRSHDLMSEVSSLKAERDEWRAECEKLKGFQRHTDDAKVKNKLQFEHGDLRSLIDEMRQELNYEKDLNANLRLQLQKTQESNTELILAVQDLEEMLEQKNCEISEAKKAEEEDDELKALEDLVKDQKNDRKTYELEQKVMELYDEIELHMRDKDEIAIQTEQLALDYEILKQENHDLSCKLEQCQLQEQLKIQHERSSSAAAMINELEKKIEGLENELKQQSADYSNTSATIRELQSHVRSLEEELEKQGQDFEADLEAMTVSKVEQEQRAIRAEEALRKMRLRNAHTAEKLQEEFGRLSKQMASTFEANENVAMKALAEASELRSQRTNLEEALQKANEELRSVREKLHELSHQIKSNSTQIEQMTSELETKSKQLEHQDKKSESFSQEIQMLKSEIDRLVGENSNLKKQAGQVETMRVDLAQVTTLAREAEMLIQTRNTERNELESKVISAKKESDKLLDELEKLRNMKDEKESLLELLQAEFQKLKVECNDLKHSLAEDEIEKEKLRKQILQLKAELKKEEASNSSEKKLRHNNGRVAATIGGNKTAPKPKLNSASHGPAEVANLREKIKTLEITNGRNDTASHGGTFEKTRQRADNSSNNGNELSVNSNTNSFKTAPTVGDSNGNLDELLTELSSLKEKNQSMENELKDMQERYSEISLKFAEVEDRLQQNSTTPINPELLSKQFLSSIESKNQRFRSKAEAEGSILMRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTKRSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETMSIPLEMRPFLQS 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3040853 3047304 + CmaCh16G005880.1 Cma16g00588 311186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00588 1169 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1000 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 205 243 - -
Cma16g00588 1169 Gene3D Histone, subunit A 1020 1133 IPR009072 GO:0046982
Cma16g00588 1169 MobiDBLite consensus disorder prediction 868 887 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 147 175 - -
Cma16g00588 1169 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 140 IPR019448 -
Cma16g00588 1169 SUPERFAMILY Histone-fold 1051 1129 IPR009072 GO:0046982
Cma16g00588 1169 Coils Coil 755 852 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 190 296 - -
Cma16g00588 1169 Coils Coil 956 997 - -
Cma16g00588 1169 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1000 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 905 956 - -
Cma16g00588 1169 Coils Coil 287 349 - -
Cma16g00588 1169 Coils Coil 689 737 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 921 956 - -
Cma16g00588 1169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1056 1120 IPR003958 -
Cma16g00588 1169 Coils Coil 493 513 - -
Cma16g00588 1169 Coils Coil 640 681 - -
Cma16g00588 1169 Coils Coil 590 610 - -
Cma16g00588 1169 Coils Coil 523 578 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 160 175 - -
Cma16g00588 1169 Coils Coil 380 462 - -
Cma16g00588 1169 MobiDBLite consensus disorder prediction 265 279 - -
Cma16g00588 1169 Coils Coil 141 161 - -
Cma16g00588 1169 ProSiteProfiles C2 NT-type domain profile. 6 140 IPR019448 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00588 - - - csv:101221081 1425.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01064 Cma16g00588 CCT
Cma15g01215 Cma16g00588 CCT
Cma02g01064 Cma16g00588 ECH
Cma15g01215 Cma16g00588 ECH
Cma06g00414 Cma16g00588 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01470 Cma-Chr2:8425886 Cma16g00588 Cma-Chr16:3040853 0 dispersed
Cma11g01619 Cma-Chr11:10651697 Cma16g00588 Cma-Chr16:3040853 1.59E-22 dispersed
Cma15g00731 Cma-Chr15:3536913 Cma16g00588 Cma-Chr16:3040853 4.79E-43 dispersed
Cma15g01215 Cma-Chr15:7688029 Cma16g00588 Cma-Chr16:3040853 0 dispersed
Cma16g00588 Cma-Chr16:3040853 Cma19g00411 Cma-Chr19:4975799 4.60E-153 dispersed
Cma16g00588 Cma-Chr16:3040853 Cma04g00732 Cma-Chr4:3715560 4.33E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g345 Blo02g01105 Blo03g00203 Bda06g00083 . Bpe05g00637 Bpe07g00115 . Bma14g00613 . Cmo16g00637 Cma02g01064 Cma15g01215 Car02g00807 Car15g01096 . Cpe14g00498 Cpe05g00319 . . . . . . . Cla07g00764 Cam07g0819 Cec07g0878 Cco07g0854 Clacu07g0797 Cmu07g0804 Cre07g1159 Cone8ag0317 Cone12ag0316 . Cone9ag0766 . Csa05g00299 Chy09g01206 . . . . . . . Bma05g00813 Bma12g00090 . Cmo02g01506 Cmo15g01279 Cma06g00414 Cma16g00588 . . . Cpe13g00164 Bhi12g00228 . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 Lsi09g00280 . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001416 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 5 4 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36548 PF10358 NT-C2 8.30E-13 CL0154 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00588 Cma_Chr16 FPKM 4.039316 3.219583 1.388182 1.648218 5.934453 6.512683 6.158287 0.606778 0.66579 0.751522