Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00589 ATGGGATATTTCACTTCCATCCAGATTTTCTGTATGATCTTTGCAGTTCTGACTGTGACGGGTGATTCCTTTGCATCGGATGAAGCATCGGCTCTTAAAATTTTCAAACAACAAATATCTAAAGATCCAAAGAGGGTTTTATCAAATTGGAATTTACAAGTTGAAAACCCCTGTAACTGGTCTGGCATTGCATGTTCTTCAGATGGTGGCCATGTTATAAAGCTTGACGTTTCTGGGGCATTGCTGAAAGGGTTTCTAGCACCAAGCTTGGGTCAACTCAGCTTCCTACAAGAATTGTATCTTCATGGCAACAATCTGCTTGGAACAATACCCAAGGAGCTGGGGTTATTAAAGAAACTTAAGGTTCTTGATTTGGGGATGAACCAACTCTCAGGCTCGATCCCTTCAGAGATTGGGAGTTTGACAGATATTCTGAAAATCAACTTTGGATCGAACGGATTGACCGGGAGGCTACCGCCGGAGCTCGGAAATTTGAGATACCTCAGAGAACTGAGGTTAGATAGGAATAAACTTCAAGGATCTATTCCAGATGGGGATATCTTAGAACTTACATCCAATATGCATAGAATGTATGCATCAAATGCAACTGGACTCTGTCACTCAACTGAGCTCAAGTTTGCAGATTTTTCATACAATTTCTTTGTTGGGAAAGTACCCAACTGCTTGGACTATCTTCCAAGGTCAAGTTTTCGAGGGAACTGTTTTCATTTCAATGATCCTAAACAGCGAACTGCAGCTCAATGTGGTGGTGGTGCTCCACCTGCTGAATCACATTCAGGAGGTAGCTCGAAGCACATACCTATTCAGCATGCTTCCAAGCACCAAAGAACTTCAAAACCTGCCTGGCTTCTAACCCTTGAAGTCATTACTGGAATCATGACGGGTTCTCTATTTATTGTTGCTGTGATCACTTCTCTTCGAAAATGCACCGGTAAATCCTCGATCATCATTCCGTGGAAGAAATTCTCAAGTGGGAAGGACCATGATAGCCTTTACATCGACACTGAGATGCTGAAAGACGTACCAAGCATCACTAGGCAAGAGCTTGAAGTAGCCTGCGAAGATTTCAGTAATATCATTGGCTCCTCACCGGACAGTCTAGTATACAAGGGCACCATGAAAGGTGGGCCTGAGATTGCTGTTATCTCAATATGCATTAAAGAAGAAAACTGGACAGACTATCTTGAGCTCTATTTTCAACGAGAGGTGGCAGATCTAGCAAGACTAAATCATGAGAATGTTGGGAAGTTGCTAGGCTATTGTAAAGAAAGCAGTCCATTTACAAGGATGTTGGTTTTTCAATACGCATCGAATGGAACATTATACGAGCACCTTCATTATGGAGAAGGTTGTTTCTCCTGGACACGAAGAATGAATATTATCTTAGGCATTGCTCGTGGTCTTAAGTATCTTCATAGTGAACTCCAACCACCGTTTACTATATCAGAGTTGAATTCTGGTTCTGTATATCTTACCGATGATTTCTCACCGAAGCTGGTTGACTTTGAAAGCTGGAAGACCATTCTTTCAAGGTCAGAAAAAAACTCAGGCTCCATTGGAAACCAAGTCACTCAATGTATTCTTCCAAATTCTCTAGAACCACGTCATCTCGACATAGAAAGTAACATCTACGCCTTTGGTGTTATTTTACTGGAAGTAGTCAGTGGGAGACCTCCATACTGTAAGGACAAAGAATGCTTGGTAGACTGGGCCAAGGAATACCTTGAATCGCCAGACGAGATGTTTCGCTTGGTAGAACCAGAAGTGAAGCATTTTGCAGATGAAGATCTGAGGACGATATGCGAGGTGGTAAGTCTTTGCATTCATCCACAACCCACGAAGCTGATTTGTATGCGGGACATATGCAGCATGCTGGAGACCAGAATTGACACCTCGGTCTCTGTTGAGTTGAAGGCGTCTTCTCTTGCATGGGCTGAACTTGCACTTTCTTCATAG 1977 42.64 MGYFTSIQIFCMIFAVLTVTGDSFASDEASALKIFKQQISKDPKRVLSNWNLQVENPCNWSGIACSSDGGHVIKLDVSGALLKGFLAPSLGQLSFLQELYLHGNNLLGTIPKELGLLKKLKVLDLGMNQLSGSIPSEIGSLTDILKINFGSNGLTGRLPPELGNLRYLRELRLDRNKLQGSIPDGDILELTSNMHRMYASNATGLCHSTELKFADFSYNFFVGKVPNCLDYLPRSSFRGNCFHFNDPKQRTAAQCGGGAPPAESHSGGSSKHIPIQHASKHQRTSKPAWLLTLEVITGIMTGSLFIVAVITSLRKCTGKSSIIIPWKKFSSGKDHDSLYIDTEMLKDVPSITRQELEVACEDFSNIIGSSPDSLVYKGTMKGGPEIAVISICIKEENWTDYLELYFQREVADLARLNHENVGKLLGYCKESSPFTRMLVFQYASNGTLYEHLHYGEGCFSWTRRMNIILGIARGLKYLHSELQPPFTISELNSGSVYLTDDFSPKLVDFESWKTILSRSEKNSGSIGNQVTQCILPNSLEPRHLDIESNIYAFGVILLEVVSGRPPYCKDKECLVDWAKEYLESPDEMFRLVEPEVKHFADEDLRTICEVVSLCIHPQPTKLICMRDICSMLETRIDTSVSVELKASSLAWAELALSS 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3049601 3054878 + CmaCh16G005890.1 Cma16g00589 311187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00589 658 Pfam Protein tyrosine and serine/threonine kinase 365 572 IPR001245 GO:0004672|GO:0006468
Cma16g00589 658 ProSiteProfiles Protein kinase domain profile. 361 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00589 658 SUPERFAMILY Protein kinase-like (PK-like) 340 633 IPR011009 -
Cma16g00589 658 Gene3D Phosphorylase Kinase; domain 1 335 442 - -
Cma16g00589 658 PANTHER PROTEIN MALE DISCOVERER 2 12 658 - -
Cma16g00589 658 Gene3D Ribonuclease Inhibitor 142 257 IPR032675 -
Cma16g00589 658 Gene3D Transferase(Phosphotransferase) domain 1 443 648 - -
Cma16g00589 658 SUPERFAMILY L domain-like 26 232 - -
Cma16g00589 658 MobiDBLite consensus disorder prediction 252 281 - -
Cma16g00589 658 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cma16g00589 658 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Cma16g00589 658 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00589 - - - csv:101211360 1146.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01466 Cma16g00589 CCT
Cma15g01218 Cma16g00589 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01218 Cma-Chr15:7708693 Cma16g00589 Cma-Chr16:3049601 0 dispersed
Cma16g00589 Cma-Chr16:3049601 Cma18g00419 Cma-Chr18:2291335 4.20E-79 dispersed
Cma16g00589 Cma-Chr16:3049601 Cma04g00734 Cma-Chr4:3722504 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69194 PF07714 PK_Tyr_Ser-Thr 9.90E-20 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00589 Cma_Chr16 FPKM 11.205251 13.291098 8.300778 8.556164 17.026793 16.971212 18.303684 11.429175 11.00088 12.695004