Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00590 ATGGCGCTTAAAGTTTATGTGGATCGAATGTCACAGCCATCTCGCGCCGTCCTCATCTTCTGCAAGGTTAACGGGATTGCATTTGAGGAGGTGCGGGTAGACTTGTCCAAACTCCAACAGCTGTCTCCCGAATTCAAAGAGGTCAACCCAATGGCAAAGGTTCCTGCCATTGTTGATGGGAGATTTAAGCTGTTCGAGAGTCATGCTATTCTTATCTACCTTTCTTGTGCGTTTCCTGGTGTGGCAGATCACTGGTATCCAGCTGATCTTTTCAGGAGGGCTAAAATAAACTCTGTATTGGACTGGCATCATTCTAATTTACGGATTGGTGCAGCTCCTTTTGTATTCTATACTGTTCTAGCACCTTTGTTTGGCCGTCCTCAGAATTCTCAAGCAGCTGCTGAAGCTGAGATGCTTTTATCCAAGTCACTTTCGAAAATCGAGTCGTTTTGGCTGAAGGGGAACGGGAAGTTTTTGGTAGGCAGCCTTAAACCATCCATAGCTGATCTTAGCTTGGTTTGTGAAATCATGCAACTAGAGCTTTTGGATGAGAAGGAACGCAGTCGAATTCTGGGTCCATACCAGAAAGTGAGGGAGTGGGTTGAGAATACTAGAAATGCTGCAAACCCACATTTTGATGAGGTTCATAAGCTTCTCTTTAAGCTCAAAGCAACTCTTCAAAAGCAGCGCTCAGAAAAATTGACTTCAAAGATGTGA 717 44.49 MALKVYVDRMSQPSRAVLIFCKVNGIAFEEVRVDLSKLQQLSPEFKEVNPMAKVPAIVDGRFKLFESHAILIYLSCAFPGVADHWYPADLFRRAKINSVLDWHHSNLRIGAAPFVFYTVLAPLFGRPQNSQAAAEAEMLLSKSLSKIESFWLKGNGKFLVGSLKPSIADLSLVCEIMQLELLDEKERSRILGPYQKVREWVENTRNAANPHFDEVHKLLFKLKATLQKQRSEKLTSKM 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3054792 3058033 - CmaCh16G005900.1 Cma16g00590 311188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00590 238 SFLD Main.4: Theta-like 1 231 - -
Cma16g00590 238 Pfam Glutathione S-transferase, C-terminal domain 126 206 IPR004046 -
Cma16g00590 238 Pfam Glutathione S-transferase, N-terminal domain 1 74 IPR004045 -
Cma16g00590 238 Gene3D Glutaredoxin 1 82 - -
Cma16g00590 238 SFLD Main (cytGST) 1 231 - -
Cma16g00590 238 SUPERFAMILY GST C-terminal domain-like 83 217 IPR036282 -
Cma16g00590 238 Gene3D - 83 238 - -
Cma16g00590 238 CDD GST_N_Theta 3 78 IPR040075 -
Cma16g00590 238 CDD GST_C_Theta 92 222 IPR040077 -
Cma16g00590 238 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 227 IPR010987 -
Cma16g00590 238 SUPERFAMILY Thioredoxin-like 2 87 IPR036249 -
Cma16g00590 238 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cma16g00590 238 PANTHER GLUTATHIONE S-TRANSFERASE T1-RELATED 1 233 IPR043377 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00590 Cma-Chr16:3054792 Cma02g00641 Cma-Chr2:3887013 6.59E-12 dispersed
Cma16g00590 Cma-Chr16:3054792 Cma04g00735 Cma-Chr4:3726900 3.02E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00590 K00799 - csv:101211608 418.313