Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00594 ATGGAGCAATCCCCATCGGATTCTTCGTCGAGCATCGAAGCCGGAAGTCAGATTCCGGCGACATCCCCAAATTCGGCCATTCCCGAGACGCCCACTTGTTCTGTCCTTGAGGACTGCACCAGACCCAGATCTTCGTTGAGCCATACCGAGATTTTCAAAGCCATTGATGTCGTCGAGAAGAACTCTCTCGCCATTGCCGAGAGCTTTACCTCTCTCTTTGCTTCCCTGCGTTCGACTCTCTCCGAGGTCACTAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGCCGACTTCAAGAATCTGTGCTTGATGCGGCAACAAAGGGTAATCGATACATAAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGACAATCTAGCTGCTCAGCTACTTGGCTGTGAACAAGCTCCTAAATTTTCCATGAGGCTCGGCTTGGTCGTAGTTCTTGCAAGCTCAAGGATTATCGTTTCACTAGAGAGTGAGGACACGAGAAAGATCGCTAATGTTGAACCACCCAGAGAAAATAGCCATCTACCACAAGAAGATGGCAAAATTTTTCTAAGAGTACTCAAACCAGAGTCTGGAGCAACACTAAGACGAGGGCCTTGCCGGATTCACCAATTTGTATTTGTATCGATCTCAACTATGTGGATCTTTGGATGGACCGGACCATCTGGGTTCTCAGCCCGTTCTACAGCCAAAGAAGTCACAGAAGGAATTGATGGGAATGGCCTCACTGCTATTGTTACAGGAGCCTCAAGTGGTCTCGGTGAAGAGACGACACGTGTTCTTGCATTACGAGGAGTCTATGTCATTATGGCTGTAAGAAATGTTGAAGCAGGGAAAAAAGTAAAAGAAGCAGTACTGAAAGAATCCCCCTCTGCCAAAATTGATGTCATGGAGTTAGATCTTAGTTCAATGGAATCTGTAAGGAAATTTGCATCAGATTACATTGCATCAGGCCGTGCACTAAATATTCTCATGAACAATGCGGGTGTTATGGCGACGCCTTTTATGCTTTCGCATGACGGCATAGAGTTGCAGTTTGCAACAAACCATATAGGACATTTTCTTCTGACAAACCTTCTGCTGGAGACTATGAAAAAAACTGTGGTTGAAAGCAAAAAGGAGGGAAGGATTGTCAATCTGTCGTCGGAGGGGCACCGATTGACATATGGCGAAGGAGTTCGTTTCGATAAAATCAATGACGAATCAGAGTACAGAACTATCTTTGCTTATGGACAATCAAAGCTTTCCAACATATTGCATGCCAAAGAGCTTGCCAGGCGGTTGAAGGAAGAAGGGGTGGAAATAACAGCCAACGCCCTTCATCCTGGAGCAATTGCTGCTACCAATCTACTACGCTTCCATGGTCTCATTAATGCTGTTGCTACTTCCGTTGCTACATTTGTGCTTAAAAACGTCCAGCAGGGAGCGGCGACTCAGTGCTATGTGGCATTGAATCCCCAAGTGAAAGGGAATCTTGAGAGTTCAATCAGTGCTTCGCCGTTGTTGCCAGCTATAAATGGAACATTTGTCAAGGTCCAATAA 1569 45.63 MEQSPSDSSSSIEAGSQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKNSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLLGCEQAPKFSMRLGLVVVLASSRIIVSLESEDTRKIANVEPPRENSHLPQEDGKIFLRVLKPESGATLRRGPCRIHQFVFVSISTMWIFGWTGPSGFSARSTAKEVTEGIDGNGLTAIVTGASSGLGEETTRVLALRGVYVIMAVRNVEAGKKVKEAVLKESPSAKIDVMELDLSSMESVRKFASDYIASGRALNILMNNAGVMATPFMLSHDGIELQFATNHIGHFLLTNLLLETMKKTVVESKKEGRIVNLSSEGHRLTYGEGVRFDKINDESEYRTIFAYGQSKLSNILHAKELARRLKEEGVEITANALHPGAIAATNLLRFHGLINAVATSVATFVLKNVQQGAATQCYVALNPQVKGNLESSISASPLLPAINGTFVKVQ 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3067069 3078588 + CmaCh16G005940.1 Cma16g00594 311192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00594 522 Pfam short chain dehydrogenase 252 393 IPR002347 -
Cma16g00594 522 MobiDBLite consensus disorder prediction 1 30 - -
Cma16g00594 522 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 223 500 - -
Cma16g00594 522 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 250 495 IPR036291 -
Cma16g00594 522 PANTHER RETINOL DEHYDROGENASE 223 500 - -
Cma16g00594 522 Gene3D - 245 508 - -
Cma16g00594 522 PRINTS Glucose/ribitol dehydrogenase family signature 252 269 IPR002347 -
Cma16g00594 522 PRINTS Glucose/ribitol dehydrogenase family signature 442 459 IPR002347 -
Cma16g00594 522 PRINTS Glucose/ribitol dehydrogenase family signature 328 339 IPR002347 -
Cma16g00594 522 PRINTS Glucose/ribitol dehydrogenase family signature 378 394 IPR002347 -
Cma16g00594 522 PRINTS Glucose/ribitol dehydrogenase family signature 419 438 IPR002347 -
Cma16g00594 522 Pfam BLOC-1-related complex sub-unit 6 C-terminal helix 53 136 IPR046465 -
Cma16g00594 522 CDD retinol-DH_like_SDR_c_like 250 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00594 - - K19329 csv:101210378 494.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00309 Cma-Chr6:1470109 Cma16g00594 Cma-Chr16:3067069 3.97E-113 dispersed
Cma14g00162 Cma-Chr14:660243 Cma16g00594 Cma-Chr16:3067069 4.83E-106 dispersed
Cma15g01087 Cma-Chr15:6913773 Cma16g00594 Cma-Chr16:3067069 1.00E-82 dispersed
Cma16g00594 Cma-Chr16:3067069 Cma16g01224 Cma-Chr16:9262820 1.43E-56 dispersed
Cma16g00594 Cma-Chr16:3067069 Cma02g01074 Cma-Chr2:6392968 8.62E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g318 . . . . . . . . . Cmo16g00643 . . . . . . . . . . . . . . Cla07g00771 Cam07g0830 Cec07g0885 Cco07g0862 Clacu07g0807 Cmu07g0813 Cre07g1167 . . . . . . . Cme07g01629 Blo03g00339 . Bda07g00479 . . . . . . . . . Cma16g00594 . . . . . . . . . . . . . . . . . . . Csa04g00595 Chy07g01216 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00594 Cma_Chr16 FPKM 13.720204 14.575183 17.239754 16.23171 21.847919 21.841227 22.553272 17.950224 17.550287 17.868328