Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00597 ATGGATTTTGGTTCATCTTCAAGATTTCACCATCAACACCAAGAAATAATGGAAGAGTCTTCTAATTCTGGTGTTTATATAGAGAAAGAGCATATGTTCGACAAGGTTGTGACGCCAAGCGATGTGGGAAAATTGAATCGTTTAGTGATCCCTAAACAACATGCTGAAAAGTTCTTCCCTTTGGATTCTTCATCAAACGAAAAGGGTCTTCTTTTAAGCTTTGAAGATCGCTGTGGTAAGCTATGGCGGTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACTAAAGGCTGGAGCCGCTTTGTTAAAGAGAAAAGACTTGATGCTGGTGATATTGTCTCCTTTCAAAGAGGGGTTTGTAAAGATCGGTTTTTTATTGATTGGCGGAGCCGCCCTCCTCGCACGCCGGTGGAGACAGCTTTTCATCACCATGGTGGTGGTGGTTATGGTGGTTATGGTGGTGGTGGTGGTGGTGGACAATTTCCTCCTCACCAATTTCAGCTTCACGGCCAGTGGAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGCCTTCCACTTGCAGCAGAATAATAGTGTTCATAATAATGTCAGCCTATTTCATACCACCTATAATCATCAACCGATCGGAGGCGGTGGTTGTGACGGTGGGGCGTCGGTTTTTTTCCAATTGAGATCCCCGGCAGCACTGCCGGGAGTCGACGACGGCGGTCATGGAATTGGGAAAGCTGCTGCAGCTAAGACATTGAGGCTCTTTGGTGTCAATATGGAATGTGTAGTATCTGAAGATTCCGATGACGACGAGGGCGACAAAGTAACAACCTCGACTTCGACAACGTTGTCGTCTCAATTCTGTGTTTATGACGGAATGCCGATGTCGATGTCGATGCCAACAAGCAATCCCAACATACCGATCACGGACTTCTTCGAGAAAGGGAAGTCGTTAGATTTTGGCACTTGA 975 46.46 MDFGSSSRFHHQHQEIMEESSNSGVYIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSNEKGLLLSFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVCKDRFFIDWRSRPPRTPVETAFHHHGGGGYGGYGGGGGGGQFPPHQFQLHGQWNPVATPLSLHRDHAFHLQQNNSVHNNVSLFHTTYNHQPIGGGGCDGGASVFFQLRSPAALPGVDDGGHGIGKAAAAKTLRLFGVNMECVVSEDSDDDEGDKVTTSTSTTLSSQFCVYDGMPMSMSMPTSNPNIPITDFFEKGKSLDFGT 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3085688 3086662 - CmaCh16G005970.1 Cma16g00597 311195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00597 324 Gene3D - 26 147 IPR015300 -
Cma16g00597 324 CDD B3_DNA 31 120 IPR003340 GO:0003677
Cma16g00597 324 Pfam B3 DNA binding domain 33 134 IPR003340 GO:0003677
Cma16g00597 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 283 IPR044800 GO:0003700
Cma16g00597 324 ProSiteProfiles B3 DNA-binding domain profile. 33 135 IPR003340 GO:0003677
Cma16g00597 324 SUPERFAMILY DNA-binding pseudobarrel domain 30 125 IPR015300 -
Cma16g00597 324 SMART B3_2 33 135 IPR003340 GO:0003677
Cma16g00597 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 15 283 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00497 Cma16g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00497 Cma-Chr6:2341282 Cma16g00597 Cma-Chr16:3085688 5.78E-49 dispersed
Cma14g00333 Cma-Chr14:1480443 Cma16g00597 Cma-Chr16:3085688 4.04E-48 dispersed
Cma15g01340 Cma-Chr15:8405825 Cma16g00597 Cma-Chr16:3085688 2.04E-60 dispersed
Cma16g00597 Cma-Chr16:3085688 Cma17g00554 Cma-Chr17:4493889 8.05E-64 dispersed
Cma16g00597 Cma-Chr16:3085688 Cma04g00739 Cma-Chr4:3757346 8.69E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36549 PF02362 B3 1.10E-26 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00597 - - bhj:120090999 368.622