Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00599 ATGGAGAACAACCGAGCTCCGTCTTTCATACTTGCTGTGGTGACAATTTATGCTGTGTTTTCAGACATGGCTGAAGCTGATGATCAAAATTCCAAGGTTCATATTGTTTACTTGGGAGAAAGGCCGTATGATGATGTTAAGTTGACAACTGATTCTCACCATGAATTGTTGGAAAGTGTTTTGGGAAGCAAGGAGAAGTCGTTGGAATCTATGGTGTATAGTTATAGACATGGCTTTTCTGGATTTGCCGCCAAGCTCACCAACTCTCAGGCTCAAAAGCTAGCACGAATGCCAATAGTGGCTCGAGTTTTTCCAAGTTCGCTATACAAAATGCGTACAACAAGAAGTTGGGATTTTCTCGGCCTCTCGTCTTCCCCATCTGAATCCTCGAACCTTTTTCATCGAGCGAAAATGGGTGACAATGTCATCATAGGTGTCATTGATACAGGATTCTGGCCGGAATCGGAGTCATTCAATGACAAAGGAATGGGGCCAATACCATCACGATGGAAAGGCATTTGCCAATCAGGGGAAGACTTCAATTCCTCACATTGCAACAAAAAGGTCATCGGAGCGCGTTGGTTCGCCAGTGCCTTAATAGCCGACCATGGGGAGGAGGCGGTATTCAAGGATTACTTATCTGCACGAGACAACGAAGGACATGGAACCCACACAGCCAGCACAGCCGGGGGTGCATTTGTAAGAAACGTCAGCTACTTTGGCAATGGGCGCGGCACGTTGAGAGGTGGCGCACCATTGGCACGGTTGGCCATATACAAAGTCCTGTGGAGTGATAGCCGCTTAGGGTCAGGGGCAGACATATTGAAGGGCATAGATGAGGCCATTCACGACGGTGTGGATGTGCTGTCTATGTCAATTGGCAAATCAATTCCTCTGTTTCCGGATGTCAATGACGTGAACCCGGTCGCTGTTGGGTCGTTTCATGCCATTGCGAAGGGAATTTCTGTTGTGTGTGCGGGCGGCAATGAAGGCTCAATTCAACAGACGGTGGAAAACGTCGCGCCGTGGCTTTTTACTGTGGCTGCGAGTACCATCGATAGAGCCTTTCTTGTTTCTATTACTACTCTTGGAGATAACGCCACTTATTTGGGACAAATGTTCTTGAGAAAGGACATCGTCGGGATGCTGGTGGCTATGGATGGAAGATGTGCAGGGATTTTGGGAGGTGATATCCCAATAAGTGGGAACGTGGTTCTTCTCTGCTTCACTGATTTAGCTAAGACGGCGCCTGCATCCAACGCGGTGATGCCGGGGAAGCAAGCAAAAGTGGTTGGAGTAATTTACGCTGGCCAACAGACCGACAACTTGGTTCCTTGTGATATTCCATGCATCCATGTGGATACCCACGTTGGCACTAAATTATTCACTTACCTACTCAACGATGACGATGCATTGATAAGGTTGAGGGCCACACGAACCATAATCGGCAAGCCCATATCATCTCGGATCGCTTATTTCTCATCCAGAGGTCCAAATTCTTTTTCCCCCGGAATCCTCAAGCCTGACATAGCCGCTCCCGGAGCCAACATTATAGCTGCCGTTCCACCCAACCACAAGGGCGGTGACAAAGGGTTTGCAACAATGTCAGGGACTTCCATGGCTACGCCTCATATCTCTGGTATCGTCACTCTTATTAAATCCTTACATCCTACTTGGTCACCGGCCGCCATTAAATCAGCCCTCATTACCACCGCTCGTGTAGAGGACCCATCAGGAATGCCAATTTTTGCCGAAGGAAGTCCACCGAAAGTGGCGGACCCATTTGACTACGGCGGCGGAGTGGTGGACGCCAACGCCGCCGTCGACCCAGGTCTGATCTACGATCTGGGAGCCACGGATTACATATATTATTACCTGTGCAGCATGGGTTATACGGAGGCGGACATTTCTCACCTATCGCAGCAGAAAACAGTGTGTCCGTCGAAAAGGGCCTCTATTTTGGATTTGAATTTGCCGACCATTACTGTACCGGCGCTGATAAACTCGACCACTGTGACTCGAACTGTGACGAATGTGGGGAACTTGACGGCGGTTTATAAGGCGGTGATTAAGGCTCCACCTGGGTCCAAGGTTAGAGTGAAGCCCCGGGTGTTGGTGTTCAATTCCAATGTGAAGAAGATTTCGTTTAAGGTTAAGTTTTCGAGTACTCTTCAAAGGAACTATGGGTACTCGTTTGGAAGCTTAACATGGACCGATGGTGTTCATCTTGTTAAAAGCCCTTTGTCTGTGCGTTTTGATTTCTTTTGA 2268 48.41 MENNRAPSFILAVVTIYAVFSDMAEADDQNSKVHIVYLGERPYDDVKLTTDSHHELLESVLGSKEKSLESMVYSYRHGFSGFAAKLTNSQAQKLARMPIVARVFPSSLYKMRTTRSWDFLGLSSSPSESSNLFHRAKMGDNVIIGVIDTGFWPESESFNDKGMGPIPSRWKGICQSGEDFNSSHCNKKVIGARWFASALIADHGEEAVFKDYLSARDNEGHGTHTASTAGGAFVRNVSYFGNGRGTLRGGAPLARLAIYKVLWSDSRLGSGADILKGIDEAIHDGVDVLSMSIGKSIPLFPDVNDVNPVAVGSFHAIAKGISVVCAGGNEGSIQQTVENVAPWLFTVAASTIDRAFLVSITTLGDNATYLGQMFLRKDIVGMLVAMDGRCAGILGGDIPISGNVVLLCFTDLAKTAPASNAVMPGKQAKVVGVIYAGQQTDNLVPCDIPCIHVDTHVGTKLFTYLLNDDDALIRLRATRTIIGKPISSRIAYFSSRGPNSFSPGILKPDIAAPGANIIAAVPPNHKGGDKGFATMSGTSMATPHISGIVTLIKSLHPTWSPAAIKSALITTARVEDPSGMPIFAEGSPPKVADPFDYGGGVVDANAAVDPGLIYDLGATDYIYYYLCSMGYTEADISHLSQQKTVCPSKRASILDLNLPTITVPALINSTTVTRTVTNVGNLTAVYKAVIKAPPGSKVRVKPRVLVFNSNVKKISFKVKFSSTLQRNYGYSFGSLTWTDGVHLVKSPLSVRFDFF 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3092759 3098448 - CmaCh16G005990.1 Cma16g00599 311197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00599 755 PANTHER PEPTIDASE S8 21 751 - -
Cma16g00599 755 SUPERFAMILY Subtilisin-like 27 683 IPR036852 GO:0004252|GO:0006508
Cma16g00599 755 Pfam Fibronectin type-III domain 655 750 IPR041469 -
Cma16g00599 755 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Cma16g00599 755 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Cma16g00599 755 PRINTS Subtilisin serine protease family (S8) signature 536 552 IPR015500 -
Cma16g00599 755 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 21 751 - -
Cma16g00599 755 Gene3D Peptidase S8/S53 domain 141 621 IPR036852 GO:0004252|GO:0006508
Cma16g00599 755 Pfam Subtilase family 139 574 IPR000209 GO:0006508|GO:0008236
Cma16g00599 755 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 112 IPR037045 -
Cma16g00599 755 CDD Peptidases_S8_3 109 572 IPR034197 -
Cma16g00599 755 Pfam Peptidase inhibitor I9 33 110 IPR010259 -
Cma16g00599 755 Gene3D - 353 482 - -
Cma16g00599 755 ProSitePatterns Serine proteases, subtilase family, serine active site. 537 547 IPR023828 -
Cma16g00599 755 ProSiteProfiles Serine proteases, subtilase domain profile. 116 608 - -
Cma16g00599 755 Gene3D - 626 752 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00599 Cma-Chr16:3092759 Cma06g00692 Cma-Chr6:3468860 9.12E-157 dispersed
Cma16g00017 Cma-Chr16:100925 Cma16g00599 Cma-Chr16:3092759 0 transposed
Cma15g01080 Cma-Chr15:6878471 Cma16g00599 Cma-Chr16:3092759 1.89E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00599 - - csv:101219903 991.49