Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00601 ATGGACACAAAGAAAGTAAAGATGCATCCATCCATTTATGAGGATAATATTGATAACCATCGCCTCTCTACAGAAAGGATAAGTTGCAGCAAAAGATTTAAAGCTTCGACCGAGTCCGTATTCGCCACGTGTTCTAATTCTTGTCCAACCGTTCGAAGTAATTGTATTAGTAGTAGTCTAACAACAGAAGTTGGGAAGGGACTCAAGAATCAAGCAGTCTTGAATGGTGATATACCATCTGAAATGGAAGACGATCATCCGAATGAAGATTCAGCTGAGGAGACGGTTCCCGTGGGTGCTTTATGTCAAGCAGATTTACCTGAATGGACTGGTAATAATTCCGATAGTGACTCTAAATGGCTAGGGACACGGTTGTGGCCTCTTCAACACAGAAATAGTAATTCCGTACGTGATAGACGCGCCATTGGCAGAGGGAGACCGGATTCATGTGGCTGCCAATTTCCAGGTTCGGTTGAATGTTTTAGATTTCACATAGCTGAAGCAAGGATGAGATTAAAGCTCGAGCTTGGCTCGACATTCTTTGCATGGAGATTTCATCAAATGGGGGAGGAAATATCTCTGCAATGGACAGCTGAGGAGGAAAAGAGATTTAAGGAGTTGGCTATGTCAAGTTTCAACAATCATAATCGGTGCTTTTGGGACTATTCCTTGAGATGGTTTCCAATGAAATCAAGGAAAAATCTGATAAGCTATTACTTCAATGTGTTTCTTTTACGGCTGAGAAGCTATCAGAATCGCGTAACTCCGAATAGCATCGATAGCGACGATGAAGATTTTGAGTTTGGTTGTGTTAGTGGTGGGTTTGGAGACAAGGCAATGGAAGTTTTAGGCTCAAAGTCTTTAGAATGTTCTATAAACAGACAGGTCACAGATGTGGAGTAG 903 41.86 MDTKKVKMHPSIYEDNIDNHRLSTERISCSKRFKASTESVFATCSNSCPTVRSNCISSSLTTEVGKGLKNQAVLNGDIPSEMEDDHPNEDSAEETVPVGALCQADLPEWTGNNSDSDSKWLGTRLWPLQHRNSNSVRDRRAIGRGRPDSCGCQFPGSVECFRFHIAEARMRLKLELGSTFFAWRFHQMGEEISLQWTAEEEKRFKELAMSSFNNHNRCFWDYSLRWFPMKSRKNLISYYFNVFLLRLRSYQNRVTPNSIDSDDEDFEFGCVSGGFGDKAMEVLGSKSLECSINRQVTDVE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3103867 3107126 - CmaCh16G006010.1 Cma16g00601 311199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00601 300 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 4 299 - -
Cma16g00601 300 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 4 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00601 - - - cmos:111437591 595.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02046 Cma-Chr14:14263135 Cma16g00601 Cma-Chr16:3103867 5.29E-48 dispersed
Cma16g00601 Cma-Chr16:3103867 Cma17g00441 Cma-Chr17:2629731 1.31E-56 dispersed
Cma16g00601 Cma-Chr16:3103867 Cma08g00903 Cma-Chr8:5592616 2.30E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00601 Cma_Chr16 FPKM 5.96265 7.074764 9.798139 9.751741 7.77017 6.470536 6.946504 11.818864 12.874516 13.275934