Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00606 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTCTTCTGCGCTGCTGACGAAGCCGCGCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTTGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCGAGTGACGTTCCCCGTTGTGATATATGCGAGAACGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCACGTTGGAGGGAAACGAACACATAAGCGATACCTTTTGCTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTTCCAATGATATTAGTAAAGGACATAACCTGCCACCACCACATAAAGTGACCGTGGAAGATAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGTAGCTAACGACGATGGTCATGCCGAGACCGACACGAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGAAAATTAGGCACTAA 567 46.03 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVSNDISKGHNLPPPHKVTVEDNQQNHHRLSPVRVANDDGHAETDTKMIDLNMKPQRVHGQAANNQKIRH 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3132335 3136487 + CmaCh16G006060.1 Cma16g00606 311204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00606 188 MobiDBLite consensus disorder prediction 106 149 - -
Cma16g00606 188 CDD Bbox1_BBX-like 4 47 - -
Cma16g00606 188 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Cma16g00606 188 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 185 - -
Cma16g00606 188 Gene3D Classic Zinc Finger 2 96 - -
Cma16g00606 188 CDD Bbox1_BBX-like 56 96 - -
Cma16g00606 188 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma16g00606 188 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Cma16g00606 188 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 185 - -
Cma16g00606 188 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Cma16g00606 188 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Cma16g00606 188 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cma16g00606 188 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00703 Cma-Chr3:5739510 Cma16g00606 Cma-Chr16:3132335 1.58E-71 dispersed
Cma07g00442 Cma-Chr7:1941184 Cma16g00606 Cma-Chr16:3132335 7.92E-69 dispersed
Cma16g00606 Cma-Chr16:3132335 Cma04g00659 Cma-Chr4:3365505 1.39E-26 dispersed
Cma16g00606 Cma-Chr16:3132335 Cma04g00746 Cma-Chr4:3799634 4.27E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36551 PF00643 zf-B_box 2.40E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00606 - - csv:101208899 373.244