Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00616 ATGTCGTTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCGAAACGAGGAGAAGAAGGAAGTAGGCATTGGCGCAACCGAACAATGTCACACATTGCACCTGATCAAGAAGAACATTCTCCATTTGAGTTAATTCAGCAAGGTCGATGGGCAAATCTACCCCCCGAATTACTTCTAGACATCATCCGGAGATTGGAAGAGAGTGAAACCTCATGGCCTTTTCGAGCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGTTTGGCTCCTTCGGAGGACGAAAAACATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTGGTAGCTGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGATAGCCAGCCTCCTTGTGACTCTGCAGCTCAGCAAAATAGTCGATCAAGCCGTAGATTTCACTCTAAGCAAGTCTCTCCTAGGGTACCTGCATGTAACTACAGTGTAGGTACAGTTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCGTCATGCAAACGATTCCAGTTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACACACTCTGATGACCACCTTTCTATCGAGTCCGATTCTATGAGAAAGGATTCAGGCAAGGACTTCGGCTCAAAGACCCCATCAGAACCAGCAGTTCAGGGATCAGATGAATCGTTAGTGCTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACGGTGGCATCCGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATGAATCTCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATGCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 45.73 MSFKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEEHSPFELIQQGRWANLPPELLLDIIRRLEESETSWPFRAVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLAPSEDEKHKLLLAAKRVRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDSAAQQNSRSSRRFHSKQVSPRVPACNYSVGTVSYELNVLRTRGPRRMQCVMQTIPVSSIQEGGTAPTPTSFTHSDDHLSIESDSMRKDSGKDFGSKTPSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVMLQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3186287 3189398 + CmaCh16G006160.1 Cma16g00616 311214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00616 413 Pfam F-box domain 57 103 IPR001810 GO:0005515
Cma16g00616 413 Pfam Tub family 118 408 IPR000007 -
Cma16g00616 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cma16g00616 413 MobiDBLite consensus disorder prediction 208 228 - -
Cma16g00616 413 SUPERFAMILY Tubby C-terminal domain-like 106 413 IPR025659 -
Cma16g00616 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cma16g00616 413 MobiDBLite consensus disorder prediction 270 286 - -
Cma16g00616 413 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cma16g00616 413 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515
Cma16g00616 413 PANTHER TUBBY-RELATED 1 413 - -
Cma16g00616 413 Gene3D Tubby Protein; Chain A 115 413 IPR025659 -
Cma16g00616 413 Gene3D - 51 105 - -
Cma16g00616 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Cma16g00616 413 MobiDBLite consensus disorder prediction 208 224 - -
Cma16g00616 413 MobiDBLite consensus disorder prediction 270 319 - -
Cma16g00616 413 MobiDBLite consensus disorder prediction 287 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01916 Cma-Chr1:12484871 Cma16g00616 Cma-Chr16:3186287 0 dispersed
Cma08g01203 Cma-Chr8:7397977 Cma16g00616 Cma-Chr16:3186287 1.07E-157 dispersed
Cma09g00148 Cma-Chr9:634904 Cma16g00616 Cma-Chr16:3186287 0 dispersed
Cma16g00365 Cma-Chr16:1736649 Cma16g00616 Cma-Chr16:3186287 5.48E-162 dispersed
Cma16g00616 Cma-Chr16:3186287 Cma04g00753 Cma-Chr4:3838952 0 wgd
Cma16g00616 Cma-Chr16:3186287 Cma07g00481 Cma-Chr7:2099589 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36552 PF01167 Tub 7.50E-107 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00616 K19600 - csv:101205595 736.102