Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00616 ATGTCGTTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCGAAACGAGGAGAAGAAGGAAGTAGGCATTGGCGCAACCGAACAATGTCACACATTGCACCTGATCAAGAAGAACATTCTCCATTTGAGTTAATTCAGCAAGGTCGATGGGCAAATCTACCCCCCGAATTACTTCTAGACATCATCCGGAGATTGGAAGAGAGTGAAACCTCATGGCCTTTTCGAGCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGTTTGGCTCCTTCGGAGGACGAAAAACATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTGGTAGCTGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGATAGCCAGCCTCCTTGTGACTCTGCAGCTCAGCAAAATAGTCGATCAAGCCGTAGATTTCACTCTAAGCAAGTCTCTCCTAGGGTACCTGCATGTAACTACAGTGTAGGTACAGTTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCGTCATGCAAACGATTCCAGTTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACACACTCTGATGACCACCTTTCTATCGAGTCCGATTCTATGAGAAAGGATTCAGGCAAGGACTTCGGCTCAAAGACCCCATCAGAACCAGCAGTTCAGGGATCAGATGAATCGTTAGTGCTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACGGTGGCATCCGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATGAATCTCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATGCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 45.73 MSFKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEEHSPFELIQQGRWANLPPELLLDIIRRLEESETSWPFRAVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLAPSEDEKHKLLLAAKRVRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDSAAQQNSRSSRRFHSKQVSPRVPACNYSVGTVSYELNVLRTRGPRRMQCVMQTIPVSSIQEGGTAPTPTSFTHSDDHLSIESDSMRKDSGKDFGSKTPSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVMLQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3186287 3189398 + CmaCh16G006160.1 Cma16g00616 311214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00616 413 Pfam F-box domain 57 103 IPR001810 GO:0005515
Cma16g00616 413 Pfam Tub family 118 408 IPR000007 -
Cma16g00616 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cma16g00616 413 MobiDBLite consensus disorder prediction 208 228 - -
Cma16g00616 413 SUPERFAMILY Tubby C-terminal domain-like 106 413 IPR025659 -
Cma16g00616 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cma16g00616 413 MobiDBLite consensus disorder prediction 270 286 - -
Cma16g00616 413 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cma16g00616 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cma16g00616 413 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515
Cma16g00616 413 PANTHER TUBBY-RELATED 1 413 - -
Cma16g00616 413 Gene3D Tubby Protein; Chain A 115 413 IPR025659 -
Cma16g00616 413 Gene3D - 51 105 - -
Cma16g00616 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Cma16g00616 413 MobiDBLite consensus disorder prediction 208 224 - -
Cma16g00616 413 MobiDBLite consensus disorder prediction 270 319 - -
Cma16g00616 413 MobiDBLite consensus disorder prediction 287 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00616 K19600 TUB, TULP; tubby and related proteins - csv:101205595 736.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01916 Cma-Chr1:12484871 Cma16g00616 Cma-Chr16:3186287 0 dispersed
Cma08g01203 Cma-Chr8:7397977 Cma16g00616 Cma-Chr16:3186287 1.07E-157 dispersed
Cma09g00148 Cma-Chr9:634904 Cma16g00616 Cma-Chr16:3186287 0 dispersed
Cma16g00365 Cma-Chr16:1736649 Cma16g00616 Cma-Chr16:3186287 5.48E-162 dispersed
Cma16g00616 Cma-Chr16:3186287 Cma04g00753 Cma-Chr4:3838952 0 wgd
Cma16g00616 Cma-Chr16:3186287 Cma07g00481 Cma-Chr7:2099589 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g01013 . 1 426 TUB Transcription Factor Family AT1G76900 71.9 5.7e-175 611.3
Cma04g00503 . 1 428 TUB Transcription Factor Family AT1G76900 70.1 3.6e-169 592.0
Cma15g00596 . 1 434 TUB Transcription Factor Family AT1G76900 70.5 1.0e-168 590.5
Cma16g00365 . 1 428 TUB Transcription Factor Family AT1G76900 69.4 5.1e-168 588.2
Cma04g02451 . 1 434 TUB Transcription Factor Family AT1G76900 67.5 4.1e-165 578.6
Cma16g00616 . 1 413 TUB Transcription Factor Family AT1G76900 51.9 3.2e-117 419.5
Cma06g01463 CCT,CST,ECH 13 400 TUB Transcription Factor Family AT1G76900 50.2 4.9e-110 395.6
Cma16g00365 . 174 428 TUB Transcription Factor Family AT1G25280 73.8 6.4e-102 367.9
Cma04g00503 . 175 428 TUB Transcription Factor Family AT1G25280 72.7 2.3e-99 359.4
Cma01g01013 . 173 426 TUB Transcription Factor Family AT1G25280 67.4 7.1e-93 337.8
Cma15g00596 . 175 434 TUB Transcription Factor Family AT1G25280 68.8 2.5e-90 329.3
Cma04g02451 . 175 434 TUB Transcription Factor Family AT1G25280 68.8 1.6e-89 326.6
Cma16g00616 . 178 413 TUB Transcription Factor Family AT1G25280 54.9 8.4e-70 261.2
Cma14g01645 CCT,CST,ECH 156 389 TUB Transcription Factor Family AT1G25280 53.6 1.4e-69 260.4
Cma04g00753 . 215 451 TUB Transcription Factor Family AT1G25280 56.2 9.3e-69 257.7
Cma06g01463 CCT,CST,ECH 154 400 TUB Transcription Factor Family AT1G25280 50.9 3.5e-68 255.8
Cma08g01203 CCT,CST,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.2 6.0e-68 255.0
Cma01g01916 CST 192 419 TUB Transcription Factor Family AT1G25280 54.5 8.7e-67 251.1
Cma09g00148 CST 180 407 TUB Transcription Factor Family AT1G25280 53.4 1.1e-66 250.8
Cma17g00306 CCT,CST,ECH 156 392 TUB Transcription Factor Family AT1G25280 50.2 3.8e-62 235.7
Cma07g00481 . 176 412 TUB Transcription Factor Family AT1G25280 50.6 3.2e-61 232.6
Cma08g01203 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.5 1.0e-100 364.0
Cma14g01645 CCT,CST,ECH 94 389 TUB Transcription Factor Family AT5G18680 61.1 2.9e-95 345.9
Cma06g01463 CCT,CST,ECH 98 400 TUB Transcription Factor Family AT5G18680 59.2 1.8e-92 336.7
Cma17g00306 CCT,CST,ECH 94 392 TUB Transcription Factor Family AT5G18680 57.6 1.8e-89 326.6
Cma16g00365 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 3.3e-83 305.8
Cma01g01013 . 112 426 TUB Transcription Factor Family AT5G18680 53.0 5.7e-83 305.1
Cma04g00503 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 7.4e-83 304.7
Cma04g02451 . 112 434 TUB Transcription Factor Family AT5G18680 52.6 1.3e-82 303.9
Cma15g00596 . 112 434 TUB Transcription Factor Family AT5G18680 51.8 6.3e-82 301.6
Cma16g00616 . 116 413 TUB Transcription Factor Family AT5G18680 52.3 4.2e-78 288.9
Cma01g01916 CST 128 419 TUB Transcription Factor Family AT5G18680 51.9 2.7e-77 286.2
Cma04g00753 . 153 451 TUB Transcription Factor Family AT5G18680 53.0 7.9e-77 284.6
Cma09g00148 CST 116 407 TUB Transcription Factor Family AT5G18680 50.3 5.7e-75 278.5
Cma16g00616 . 1 413 TUB Transcription Factor Family AT2G18280 61.1 3.0e-140 495.7
Cma04g00753 . 39 451 TUB Transcription Factor Family AT2G18280 60.6 5.1e-140 495.0
Cma07g00481 . 1 412 TUB Transcription Factor Family AT2G18280 61.2 1.2e-136 483.8
Cma09g00148 CST 1 407 TUB Transcription Factor Family AT2G18280 58.9 2.0e-123 439.9
Cma01g01916 CST 14 419 TUB Transcription Factor Family AT2G18280 59.0 3.7e-122 435.6
Cma16g00365 . 1 428 TUB Transcription Factor Family AT2G18280 52.2 3.2e-118 422.5
Cma04g00503 . 1 428 TUB Transcription Factor Family AT2G18280 52.2 9.4e-118 421.0
Cma01g01013 . 1 426 TUB Transcription Factor Family AT2G18280 51.9 3.0e-116 416.0
Cma08g01203 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.6 1.3e-114 410.6
Cma04g02451 . 1 434 TUB Transcription Factor Family AT2G18280 52.4 4.8e-114 408.7
Cma06g01463 CCT,CST,ECH 1 400 TUB Transcription Factor Family AT2G18280 51.7 7.7e-112 401.4
Cma14g01645 CCT,CST,ECH 1 389 TUB Transcription Factor Family AT2G18280 52.3 2.9e-111 399.4
Cma16g00440 CST 53 386 TUB Transcription Factor Family AT2G18280 52.1 3.3e-94 342.8
Cma04g00575 CST 50 384 TUB Transcription Factor Family AT2G18280 51.4 1.6e-93 340.5
Cma08g01203 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.2 2.5e-158 555.8
Cma14g01645 CCT,CST,ECH 1 389 TUB Transcription Factor Family AT2G47900 66.9 9.9e-155 543.9
Cma06g01463 CCT,CST,ECH 1 400 TUB Transcription Factor Family AT2G47900 66.3 2.2e-154 542.7
Cma17g00306 CCT,CST,ECH 11 392 TUB Transcription Factor Family AT2G47900 64.5 2.2e-138 489.6
Cma01g01013 . 1 426 TUB Transcription Factor Family AT2G47900 56.2 4.8e-133 471.9
Cma04g00503 . 1 428 TUB Transcription Factor Family AT2G47900 55.9 1.3e-130 463.8
Cma04g02451 . 1 434 TUB Transcription Factor Family AT2G47900 55.2 4.6e-128 455.3
Cma15g00596 . 1 434 TUB Transcription Factor Family AT2G47900 55.2 1.4e-127 453.8
Cma16g00365 . 1 428 TUB Transcription Factor Family AT2G47900 55.5 1.4e-127 453.8
Cma16g00616 . 1 413 TUB Transcription Factor Family AT2G47900 55.9 1.5e-123 440.3
Cma04g00753 . 39 451 TUB Transcription Factor Family AT2G47900 55.5 7.9e-120 427.9
Cma01g01916 CST 20 419 TUB Transcription Factor Family AT2G47900 56.6 1.3e-117 420.6
Cma09g00148 CST 46 407 TUB Transcription Factor Family AT2G47900 60.0 2.4e-116 416.4
Cma07g00481 . 1 412 TUB Transcription Factor Family AT2G47900 51.6 3.0e-111 399.4
Cma04g00575 CST 51 384 TUB Transcription Factor Family AT2G47900 52.8 6.8e-103 371.7
Cma16g00440 CST 53 386 TUB Transcription Factor Family AT2G47900 51.1 9.1e-100 361.3
Cma08g00582 . 41 295 TUB Transcription Factor Family AT1G16070 57.5 6.6e-76 281.6
Cma16g00365 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 7.5e-146 514.2
Cma01g01013 . 67 426 TUB Transcription Factor Family AT1G43640 68.5 2.2e-145 512.7
Cma04g00503 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 5.4e-144 508.1
Cma15g00596 . 65 434 TUB Transcription Factor Family AT1G43640 65.5 8.9e-139 490.7
Cma04g02451 . 65 434 TUB Transcription Factor Family AT1G43640 64.1 3.4e-138 488.8
Cma08g01203 CCT,CST,ECH 47 386 TUB Transcription Factor Family AT1G43640 51.8 9.0e-107 384.4
Cma06g01463 CCT,CST,ECH 49 400 TUB Transcription Factor Family AT1G43640 52.4 6.4e-105 378.3
Cma14g01645 CCT,CST,ECH 49 389 TUB Transcription Factor Family AT1G43640 53.2 3.2e-104 375.9
Cma09g00148 CST 69 407 TUB Transcription Factor Family AT1G43640 51.2 3.1e-99 359.4
Cma01g01916 CST 81 419 TUB Transcription Factor Family AT1G43640 50.4 6.9e-99 358.2
Cma16g00616 . 69 413 TUB Transcription Factor Family AT1G43640 50.5 7.6e-98 354.8
Cma07g00481 . 67 412 TUB Transcription Factor Family AT1G43640 50.4 2.1e-95 346.7
Cma01g01916 CST 47 419 TUB Transcription Factor Family AT1G47270 63.4 1.3e-132 470.3
Cma09g00148 CST 34 407 TUB Transcription Factor Family AT1G47270 63.7 1.3e-132 470.3
Cma16g00616 . 34 413 TUB Transcription Factor Family AT1G47270 57.7 6.2e-122 434.9
Cma07g00481 . 33 412 TUB Transcription Factor Family AT1G47270 58.1 3.1e-121 432.6
Cma04g00753 . 39 451 TUB Transcription Factor Family AT1G47270 55.0 2.6e-120 429.5
Cma04g00503 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 1.8e-113 406.8
Cma16g00365 . 1 428 TUB Transcription Factor Family AT1G47270 51.5 2.4e-113 406.4
Cma01g01013 . 31 426 TUB Transcription Factor Family AT1G47270 51.9 3.1e-113 406.0
Cma04g02451 . 48 434 TUB Transcription Factor Family AT1G47270 52.6 2.4e-110 396.4
Cma08g01203 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT1G47270 50.5 7.1e-110 394.8
Cma15g00596 . 48 434 TUB Transcription Factor Family AT1G47270 52.6 9.3e-110 394.4
Cma14g01645 CCT,CST,ECH 1 389 TUB Transcription Factor Family AT1G47270 50.7 1.7e-103 373.6
Cma16g00440 CST 1 386 TUB Transcription Factor Family AT1G53320 71.2 1.7e-153 539.7
Cma04g00575 CST 1 384 TUB Transcription Factor Family AT1G53320 70.8 4.7e-151 531.6
Cma16g00616 . 20 413 TUB Transcription Factor Family AT1G53320 50.9 8.2e-103 371.3
Cma08g01203 CCT,CST,ECH 24 386 TUB Transcription Factor Family AT1G53320 50.1 2.0e-101 366.7
Cma14g01645 CCT,CST,ECH 33 389 TUB Transcription Factor Family AT1G53320 50.3 1.1e-96 350.9
Cma08g01203 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.5 2.2e-95 346.3
Cma14g01645 CCT,CST,ECH 102 389 TUB Transcription Factor Family AT3G06380 63.5 2.8e-95 345.9
Cma06g01463 CCT,CST,ECH 98 400 TUB Transcription Factor Family AT3G06380 60.9 1.8e-94 343.2
Cma17g00306 CCT,CST,ECH 98 392 TUB Transcription Factor Family AT3G06380 57.5 2.2e-84 309.7
Cma04g00503 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 5.5e-83 305.1
Cma16g00365 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 3.6e-82 302.4
Cma04g02451 . 116 434 TUB Transcription Factor Family AT3G06380 52.3 6.7e-81 298.1
Cma01g01013 . 116 426 TUB Transcription Factor Family AT3G06380 51.4 6.7e-81 298.1
Cma15g00596 . 116 434 TUB Transcription Factor Family AT3G06380 51.4 3.7e-79 292.4
Cma01g01916 CST 131 419 TUB Transcription Factor Family AT3G06380 51.0 2.4e-78 289.7
Cma16g00616 . 120 413 TUB Transcription Factor Family AT3G06380 51.5 5.3e-78 288.5
Cma09g00148 CST 120 407 TUB Transcription Factor Family AT3G06380 51.0 4.5e-77 285.4
Cma04g00753 . 157 451 TUB Transcription Factor Family AT3G06380 52.9 1.7e-76 283.5
Cma07g00481 . 118 412 TUB Transcription Factor Family AT3G06380 51.4 2.1e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36552 PF01167 Tub 7.50E-107 CL0395 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00616 Cma_Chr16 FPKM 24.113703 28.256912 26.588467 28.107063 27.611206 26.698467 24.228502 39.699203 37.143051 40.23373