Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00618 ATGGGAACTGATAGTACTGAAAATGTTGAGGCAGCTTCAAATGTCCATTCCTTTAAGGTTCATTGTAGAATGTGCACCGAGTTAATGAAATTGGTTGACCGGGTGTCGGAGATATTACCGGAAATTGAAGCAGCTCGGCCTGGAAGCCCGGAAGGTCGAGAGGCGCTGTGCAATTTAAACAATGGAAAGATGAAAGCAGAGCTGCTTCTTCAGTATTGTCGAGAGTCTAGTAAGGTTTATCTGGCATTAACTGGAGATCGAATCATCTCTAGATGTCATAGAGTGAGGACTTTGTTGGAGCATAGTTTGCGTAAAATTAAGTACATGGTTCCTGTGACATTGGCTCGAAAGATCTCTCAAATGGCTGATGATCTTCGGGTTGCAAAATTTATCCTTGACTCATCCGACGAAGAGGCTTGGAAGGCTTTGCGACAATTGCTGAAGCTAGGTGCTTCGCCTCCAGATGTATTGGAAAAGTCGGAAATCGCAACTCTTAAAATTGCTGCTTTGAGGCTTAATATTTCATCACCCAAGGAAATGTTATACGAGAAACGGTCCATCAGAAAACTATTAGATGATGTTGGTCATGGCGATCCCCCGAAAAAGAAGATTTTGACCTACCTTCTATATATTTTGAAGAAGCATGGGGAGTTGATACTGCAAGAAATCAGGGAAAACCAAGCTGATAGTTCTAACAGTAATGGTCATAGGGAAATTGAAGTTAATGTGAAACATGGAAATAATGCTTCCCATGCTGATATGATTCTCAATAGGGCCACTCCCCCTGAGGAATTTAAGTGCCCCATATCAATGAGATTGATGTATGATCCTGTTGTGATCGCGTCTGGAGTGACATATGAGAAGGCGTGGATTGAAAAGTGGTTTGAGGAGGGTCATAATACGTGCCCGCATACCAAAATGAAACTAACCGATTTTTCGATGATTCCTAATGTTGATCTAAAGAATGTAATTGATAAATGGTGCATAAAGTTTGGAGTCACAATCCCGGATCCAACTGTGGAACCAGAATGCCCCGAGGTTTGGGAGAATTCCATTGCTAGCTTTGGAAGTTCGATGAATGATATTCGTCTACCCATCGATTTTAGCAATATATCGCTTGGAGGTCTCGATAATAGTTACTATCCAGATTCATTGAGGCTCAATGGTGGCAATGAATTGGCTATCAAGTCTGGGCAGAGTAAAGATCATGATCTGCAAAGGTTTCAATCCGATTCATATGCTGAGGAAGCAGACTTGGAGTTTCCATCTACCATAAATGAGCTTTCGTGGGAATCGAAATGCAAGATTATTAAAGATATGAAAGTTGTCATTAACAAAAAAGGCGTCGGTCCGGCCTTATCTGAAACCGTCGTGGATCACCTTGCCTTATTTTTAAAGGATGCGTGTGATCAGCAGGATTCCGAGGCTCAGAAAAATGGAGCTGAGCTATTTCTTTCACTTGTGAGAAGAAGCAGGTCTAATAGGCTGATTGTACCTGAGAAGGTTCTTACAACATTGGCTAGTTTACTGAATTCAGTTGTGACTTATGAAGTTCTTGCCATTTTAGAAGCGTTATCTGGCCACCGTAAATGTGGGTCTAATTTTGTCACATCTGGTGTCCTTGCTTCAATAGCTAAGTATCTCGACTCAGAGGTCGGAGACTTGCAAGAATTTGCCATTAAAACCTTTTACAATCTATCCTCAAACGGCGACATCTGCTCCGACATCGTTTCACTGGGGTGCATCCCAAAACTAGTTCCCTTGCTAAATTATGAGAATCTCTCAGGCAAATGTATATTCATTCTGAAAAATTTGTGCCACACAGAAGACGCAAGGATCTCTATTGTTGAAACTAATGGCTGCATTAGCTCTATTGCTCAATGTCTCTGGCTGGGCAGTCTTGAAGACCAGGAGCATGCCGTTACTATCCTCCTTTCGCTATGCTCGCAGCGATTCGAGTATTGTGAGTTAGTAATGGAGGAAGGTGTTATTCCCCCTCTTTCCAGTATCACTATGAAGGGTAGTGAAAAAGGAAAAGCGGGTGCCACCGAATTACTCCGACTTCTAAGAGACTTTCAGGATAATGAGCAGCAAGAACCTTGTGTTTCTGAACCTCCATACTCGTACGAACCCCCTTGCAACTCCGAGCAAGGGAAGCCGAGCAAGAAGTCTGGATTTCTTGGAATGAACATATCAATCTTCTCGAAGCGCGGTCTTCTAACGAAGAAGTAA 2232 42.52 MGTDSTENVEAASNVHSFKVHCRMCTELMKLVDRVSEILPEIEAARPGSPEGREALCNLNNGKMKAELLLQYCRESSKVYLALTGDRIISRCHRVRTLLEHSLRKIKYMVPVTLARKISQMADDLRVAKFILDSSDEEAWKALRQLLKLGASPPDVLEKSEIATLKIAALRLNISSPKEMLYEKRSIRKLLDDVGHGDPPKKKILTYLLYILKKHGELILQEIRENQADSSNSNGHREIEVNVKHGNNASHADMILNRATPPEEFKCPISMRLMYDPVVIASGVTYEKAWIEKWFEEGHNTCPHTKMKLTDFSMIPNVDLKNVIDKWCIKFGVTIPDPTVEPECPEVWENSIASFGSSMNDIRLPIDFSNISLGGLDNSYYPDSLRLNGGNELAIKSGQSKDHDLQRFQSDSYAEEADLEFPSTINELSWESKCKIIKDMKVVINKKGVGPALSETVVDHLALFLKDACDQQDSEAQKNGAELFLSLVRRSRSNRLIVPEKVLTTLASLLNSVVTYEVLAILEALSGHRKCGSNFVTSGVLASIAKYLDSEVGDLQEFAIKTFYNLSSNGDICSDIVSLGCIPKLVPLLNYENLSGKCIFILKNLCHTEDARISIVETNGCISSIAQCLWLGSLEDQEHAVTILLSLCSQRFEYCELVMEEGVIPPLSSITMKGSEKGKAGATELLRLLRDFQDNEQQEPCVSEPPYSYEPPCNSEQGKPSKKSGFLGMNISIFSKRGLLTKK 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3193789 3198254 - CmaCh16G006180.1 Cma16g00618 311216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00618 743 CDD RING-Ubox_PUB 265 306 IPR045210 -
Cma16g00618 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 330 IPR013083 -
Cma16g00618 743 SUPERFAMILY ARM repeat 470 694 IPR016024 -
Cma16g00618 743 Pfam Kinesin-associated protein (KAP) 518 635 - -
Cma16g00618 743 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Cma16g00618 743 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Cma16g00618 743 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Cma16g00618 743 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 24 705 - -
Cma16g00618 743 SMART arm_5 569 607 IPR000225 GO:0005515
Cma16g00618 743 SMART arm_5 608 649 IPR000225 GO:0005515
Cma16g00618 743 Gene3D - 595 702 IPR011989 -
Cma16g00618 743 Gene3D - 451 594 IPR011989 -
Cma16g00618 743 PANTHER U BOX DOMAIN-CONTAINING 24 705 - -
Cma16g00618 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 580 620 IPR000225 GO:0005515
Cma16g00618 743 MobiDBLite consensus disorder prediction 698 724 - -
Cma16g00618 743 SUPERFAMILY RING/U-box 259 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00618 - - - cmax:111482874 1459.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01823 Cma-Chr4:9191434 Cma16g00618 Cma-Chr16:3193789 1.35E-74 dispersed
Cma05g00083 Cma-Chr5:352529 Cma16g00618 Cma-Chr16:3193789 2.08E-88 dispersed
Cma12g00066 Cma-Chr12:239998 Cma16g00618 Cma-Chr16:3193789 3.09E-85 dispersed
Cma16g00618 Cma-Chr16:3193789 Cma18g00710 Cma-Chr18:6460697 1.62E-69 dispersed
Cma16g00618 Cma-Chr16:3193789 Cma04g00755 Cma-Chr4:3847267 1.96E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00618 Cma_Chr16 FPKM 14.858376 17.930281 12.081093 12.56166 16.539299 13.245988 15.10951 10.691984 9.384423 11.024657