Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00625 ATGGGAACATTGGGAAAGGCAATTTACACCGTCGGATTCTGGATCCGGGAGACCGGCCAAGCCCTCGATCGTCTTGGTTGCCGGCTCCAAGGGAGTTACTACTTTCAAGAACAACTATCTAGGCATAGGACGCTCATGAACATATTTGACAAGGCTCCTGTGGTTGACAAGGATGCATTTGTGGCGCCTAGTGTATCTATCATTGGTGATGTGCAGGTGGGACGGGGTTCCTCCATTTGGTATGGGTGTGTTTTGAGAGGTGATGTTAACAGCATTAGTGTTGGTTCCGGGACCAACATACAAGACAACTCTTTAGTTCACGTAGCAAAATCCAATTTGAGTGGAAAGGTTTTACCAACGATCATTGGAGATAATGTTACTGTTGGTCACAGTGCCGTGTTACATGGATGTACTATTGAGGACGAGGCATTTGTGGGGATGGGAGCGACATTGCTTGATGGAGTCTTCGTTGAAAAACATGCAATGGTTGCTGCTGGAGCACTTGTGAGGCAGAATACAAGGATCCCATGCGGAGAGGTATGGGGAGGCAATCCGGCCAAATTCCTGAGGAAGCTTACAGAAGAAGAGATGGCCTTTATCTCCCAGTCAGCCATTAATTATTCCAACTTATCACTGGTTCATGCAGCTGAAAACGTAAAGAGCTTTGACGAAATTGAATTCGAAAAGGTTCTTCGCAAGAAGTTTGCTCGTCGTGATGAAGAGTATGATTCAATGCTGGGCGTTGTTCGTGAAATCCCCCCAGAGCTCGTTCTTCCAGATAATATACTGGCCAATAAAGTACCAAAATCTTCTTAA 816 45.83 MGTLGKAIYTVGFWIRETGQALDRLGCRLQGSYYFQEQLSRHRTLMNIFDKAPVVDKDAFVAPSVSIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVFVEKHAMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEEEMAFISQSAINYSNLSLVHAAENVKSFDEIEFEKVLRKKFARRDEEYDSMLGVVREIPPELVLPDNILANKVPKSS 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3222668 3226887 + CmaCh16G006250.1 Cma16g00625 311223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00625 271 PANTHER DYNACTIN SUBUNIT P25 1 270 - -
Cma16g00625 271 CDD LbH_gamma_CA_like 54 211 - -
Cma16g00625 271 PANTHER GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL 1 270 - -
Cma16g00625 271 SUPERFAMILY Trimeric LpxA-like enzymes 47 208 IPR011004 -
Cma16g00625 271 Pfam Hexapeptide repeat of succinyl-transferase 119 151 IPR001451 -
Cma16g00625 271 Gene3D Hexapeptide repeat proteins 43 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00625 K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-] - csv:101204629 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00256 Cma-Chr5:1077542 Cma16g00625 Cma-Chr16:3222668 0 dispersed
Cma12g00458 Cma-Chr12:2402740 Cma16g00625 Cma-Chr16:3222668 2.98E-171 dispersed
Cma16g00625 Cma-Chr16:3222668 Cma04g00760 Cma-Chr4:3872127 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g998 . . . . . Bpe13g00438 . . Cmo04g00810 Cmo16g00681 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1637 . . . Chy07g01248 . . . Bda11g01858 . . . . Bma06g00116 . . . Cma16g00625 . . . . Cpe14g00534 . . . . . . . Cla07g00818 Cam07g0882 Cec07g0935 Cco07g0923 Clacu07g0857 . . Lsi07g00249 Csa04g00555 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002586 4 2 2 1 2 1 3 1 1 2 1 1 4 2 2 4 1 3 3 1 2 1 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00625 Cma_Chr16 FPKM 18.284563 18.7607 5.574717 6.531785 10.480261 11.679945 10.183028 3.739263 4.200828 4.264198