Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00627 GAGGCCAGAAAAAGAAAGAAAAAAAAGGGGGACAAAAAAACTTTCGTACTTCATCAAATTCTACCATTAAAAGGGGCATTTGAACAACACAAAGAACTCATCCAAGTAGAGAAGAACAAGAACAAGAACAAGAACCAAACCCAGAACCAGAACCAGCTCCAAATCTTTACCCATATGGATATTGAAAAAGTTTTCCACATGAATGGTGGAATTGGCAACAATAGCTATGCCAAAAACTCCCATCTTCAGAAGAAAGGTTCAGATATGGTAAAGCACATAACAATGGAGGCCATAGAGCAAGTTTACCTTTCCACCGGCACTCCTGCGAGCTTCGGCATCGCCGATCTGGGCTGCTCCTCCGGTCCAAATTCGCTATCGATCGTCAAAGAAATAATCCAAGCCGTTCAATCGCTAAGCTCCAGTCATCTACAGCCGCCGCCGGAGTTCCGCGTCTATTTGAACGACCTTCCGACCAACGATTTCAATTCCATCTTCAAAGCCCTCCCCGATTTCTGCAGAGAGCTTCAAAACGAAGGCAAAAATCAAAATCCATCGGGGTTTTTCATTGGGGCCTATCCAGGCTCATTTTACCAGAGACTTTTCCCCAATAATTGCTTGCACTTCGTCTATTCCTCTTACAGCCTCCACTGGCTTTCTAGGGTTCCTGAGGGGCTTCGAAATGAATTGGGGGAACCGCTGAACAGAGGGACCATTTATATATCGGAGAGAAGTCCAATTTCCATAGCGGAGGCTTACGTGAAGCAATTCCGGCGAGATTTCTGGGAGTTCCTGAGGAAGAGAGCGGAGGAGGTGGTTTCCGGCGGCCGGATGGTGCTGATCTTGCTCGGAAGAGACGGTGCCGATCATGTCGATAGAGGAAATTCCTTCTTGTGGCACCTTCTTGCTCGAGCCTTCGCCATTTTAGTCTCGCAGGGAAAAGTGAAAGAGGAGGAAGTAGATAGATACGACGTGAATTTTTATGCACCGAACAAAGAGGAGATAGAAGAGGAAGTAAAAAGAGAAGGGTCGTTCGGGTTGGAGAGAATAGAGAAGTTTGAGTTAGAAAAGAAGGTGAAAAACAGCGAGAGCTACGGGAAAGAAGTGGCAAAGACTGTTAGAGCCATTCAAGAATCTATGATATCTCACCATTTCGGTGATGCAATTTTGGAGTCTTTGTTTCATAATTATGGTACCATTTTGGACGAAGAATCTGCGAAACAAGATATCAAACCCATCTCTTTTGTTATCGTTCTTACAAAGTTTTAA 1266 44.71 EARKRKKKKGDKKTFVLHQILPLKGAFEQHKELIQVEKNKNKNKNQTQNQNQLQIFTHMDIEKVFHMNGGIGNNSYAKNSHLQKKGSDMVKHITMEAIEQVYLSTGTPASFGIADLGCSSGPNSLSIVKEIIQAVQSLSSSHLQPPPEFRVYLNDLPTNDFNSIFKALPDFCRELQNEGKNQNPSGFFIGAYPGSFYQRLFPNNCLHFVYSSYSLHWLSRVPEGLRNELGEPLNRGTIYISERSPISIAEAYVKQFRRDFWEFLRKRAEEVVSGGRMVLILLGRDGADHVDRGNSFLWHLLARAFAILVSQGKVKEEEVDRYDVNFYAPNKEEIEEEVKREGSFGLERIEKFELEKKVKNSESYGKEVAKTVRAIQESMISHHFGDAILESLFHNYGTILDEESAKQDIKPISFVIVLTKF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3233193 3235104 + CmaCh16G006270.1 Cma16g00627 311225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00627 421 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 59 420 IPR029063 -
Cma16g00627 421 Pfam SAM dependent carboxyl methyltransferase 96 420 IPR005299 GO:0008168
Cma16g00627 421 Gene3D - 64 406 IPR042086 -
Cma16g00627 421 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 60 419 IPR005299 GO:0008168
Cma16g00627 421 PANTHER OS01G0701700 PROTEIN 60 419 - -
Cma16g00627 421 Gene3D Vaccinia Virus protein VP39 79 355 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00627 - - - csv:101204383 633.254
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00732 Cma16g00627 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00971 Cma-Chr9:4918603 Cma16g00627 Cma-Chr16:3233193 1.08E-59 dispersed
Cma16g00627 Cma-Chr16:3233193 Cma16g01245 Cma-Chr16:9410986 5.00E-75 dispersed
Cma16g00627 Cma-Chr16:3233193 Cma03g00729 Cma-Chr3:5842990 1.51E-95 wgd
Cma16g00627 Cma-Chr16:3233193 Cma07g00473 Cma-Chr7:2067016 1.68E-104 wgd
Cma16g00627 Cma-Chr16:3233193 Cma07g00473 Cma-Chr7:2067016 1.68E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1008 . . . . Bpe15g00419 . . . . Cmo16g00683 Cma03g00732 . . . . . . . . . . . . . . . . . . . . Cone8ag0823 . . . . . Chy07g01249 . . . . . . . . . . . . Cma16g00627 . . . . Cpe14g00535 . . . . . . . Cla07g00819 Cam07g0883 Cec07g0936 Cco07g0924 Clacu07g0858 Cmu07g0861 Cre07g1220 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006385 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00627 Cma_Chr16 FPKM 6.627275 6.935213 16.420679 16.563227 2.558419 1.972682 2.518062 1.924482 1.685646 1.878123