Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00631 ATGGCTACGTTTGTGGAGCCACCGAACGGAATCAGGTCAATGGGGAAGCATTATTACACAATGTGGCAAACTCTGTTTGAAATTGATATTAAGTATGTCCCAATCAAGCCGATTGGGCGAGGAGCTTATGGTGTGGTGTGTTCTTCGATCAACCGAGAGACCAATGAAAAAGTGGCGATCAAGAAGATTCATAATGTGTTTGAGAATCGCACGGACGCCATGAGAACGCTGAGGGAGCTTAAGCTTCTGAGGCACATTAGGCACGACAACGTGATTGCTTTGAAGGATGTAATGATGCCGATCCATAGAAAAAGCTTTAAGGATGTGTATTTGGTTTATGAGCTCATGGATACGGATCTTCATCAGATTATCAAGTCTTCTCAGCCCCTTTCCAATGATCATTGCAAGTATTTTATCTATCAGTTGCTTTGTGGGTTGCAATATCTTCATTCAGCGAACATTCTTCACCGGGATTTGAAGCCCGGGAACCTCCTCGTCAATGCTAACTGTGATCTGAAGATATGCGATTTCGGGTTGGCACGAACTAGCATGGGTCATGACCAGTTCATGACTGAGTATGTTGTCACTCGCTGGTATCGCGCACCAGAGCTTCTTCTCTGCTGTGACAACTATGGGACTTCTATTGATGTATGGTCTGTGGGCTGCATCTTTGCTGAGATTCTGGGTCGGCAGCCTATCTTCCCGGGGACGGAGTGCTTCAACCAACTCAACTTAATCATGAACATTCTCGGTTCTCCAAAGGAAGCTGATATCAAGTTCATCGACAATGCAAAAGCCAGAAAGTATATCAAGGGGATGCCGTTTTCAAGAGGAATAAACTTTTTACATCTATATCCACACGCCGAACCTTTAGCTCTAGACTTATTACAAAAGATGCTTGTGTTTGATCCAACTAAGAGAATTACAGTTGACGAAGCACTTCAACATCCATACATGTTGGGGCTATACGACCCAAAATTCAATCCTCCTGCCAATGTTCCCCTCACTCTCGACATCGAGGATTCACTTGAGGAGAACACAATCAGGGAAATGATGTTGAACGAGATGCTCTATTACCATCCCGAAGCAGCATATTCTTGA 1101 44.23 MATFVEPPNGIRSMGKHYYTMWQTLFEIDIKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIHNVFENRTDAMRTLRELKLLRHIRHDNVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSMGHDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECFNQLNLIMNILGSPKEADIKFIDNAKARKYIKGMPFSRGINFLHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMLGLYDPKFNPPANVPLTLDIEDSLEENTIREMMLNEMLYYHPEAAYS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3258541 3260388 + CmaCh16G006310.1 Cma16g00631 311229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00631 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cma16g00631 366 Gene3D Phosphorylase Kinase; domain 1 19 350 - -
Cma16g00631 366 SUPERFAMILY Protein kinase-like (PK-like) 31 326 IPR011009 -
Cma16g00631 366 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00631 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Cma16g00631 366 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00631 366 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Cma16g00631 366 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00631 366 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma16g00631 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Cma16g00631 366 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00718 Cma16g00631 CCT
Cma03g00718 Cma16g00631 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00758 Cma-Chr4:3866271 Cma16g00631 Cma-Chr16:3258541 2.80E-169 dispersed
Cma12g00445 Cma-Chr12:2332098 Cma16g00631 Cma-Chr16:3258541 0 dispersed
Cma16g00631 Cma-Chr16:3258541 Cma15g01248 Cma-Chr15:7927658 3.52E-146 dispersed
Cma16g00631 Cma-Chr16:3258541 Cma05g00263 Cma-Chr5:1112475 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69195 PF00069 Pkinase 7.10E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00631 K20537 - csv:101203896 689.108