Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00633 ATGATTGGTCTCTCCCGCAACTTCTCCACAGTCTGCAAGCTTAGTTATTTACAGCCCCGCCAGACACAGGCGACGCCAAATTTCATACCCTTTTCTCAGCTTCAACAGCAGCGGAAGCTCTTAGAATGGCGACTCATAAGTATTCTCCACGACTGCACGGACTTTTCTCAAATCAAGCAAGTCCATGGCCAAATCATTTGCAATGGCTTGAGTCAATGCTCTTACGTCCTTACCAAACTCATTCGCATGCTTTCGAAGGTAGATGTCCCAATGGATTGCTACCCACGTCTGGTTTTTGGACAGGTTAATTACCCCAATCCCTTTCTTTGGACTGCCATGATTCGTGGGTATGCCCTTCAAGGACCCTTCACTGAGTCTATTAACCTGTATACTAACATGAGGGGGAATGGCGTCAGTCCTGTTTCGTTTACGTTTTCTGCGCTTTTTAAGGCTTGTGGGGCTTCTCTTAATTTGGATTTAGGTAGGCAGGTGCATGCTCAGACGATTTTGATTGGGGGATTCGCTTCTGATTTATATGTTGGTAATACGATGATTGATATGTATGTGAAATGTGGGGTTTTGGGTTGTGGGCGGAAGGTGTTCGATGAAATGTCTGAGAGAGATGTGGTTTCATGGACTGAGCTGATTGTTGCGTATGCGAAGTTTGGGGACATGGAATCTGCTAGGGGGCTGTTTGATGAATTGCCTTTGAAGGATATGGTGGCATGGACTGCAATGGTCACTGGTTATGCCCAAAATGCTAGACCAAAGGAGGCATTGGAGTATTTTCAGAAGATGCAGGATGTCGGTATCGAGACCGATGAAGTTACACTTGTTGGTGTCATCTCAGCCTGTGCACAATTGGGTGCAGTTAAATATGCTAACTGGATTAGAGACATTGCTGAAAGATCAGGCTTTGGACCTTATGAACATGTAATGGTGGGATCTGCTCTTATCGATATGTATTCTAAATGTGGTAGTCCTGATGAGGCATACAAGATTTTTGAAGGAATGAAGGAAAGAAATGTGTTCTCGTATAGTTCAATGATTGTGGGATACGCTATGCATGGTCGCGCTCATTCCGCTTTGCAGTTGTTCCATGAGATGTTAAAGACTGAGATCAGGCCAAATAAGGTTACTTTCATTGGGGTGCTTTCAGCATGTAGCCATGCCGGTATGGTCGAACAAGGTCGGCAGCTATTTGCTAAGATGGAAAAGTATTTTAACGTAACGCCTTCACCCGATCATTATGCGTGTATGGTTGATCTCCTTGGTCGAGGTGGATGTTTGGAAGAAGCTCTTGAACTCATTGAAACCATGCCAATGGAACCCCATGGAGGCGTATGGGGAGCACTGCTTGGAGCTTGCCGCATCCATGGGAATCCCAACATTGCTCAGGTAGCTGCCGATCAATTATTCAAGCTAGAACCAGATGGTATAGGTAACTACATTCTGCTATCAAACATATATGCATCAGCAGGAAGATGGGAAGAGGTGTCGAAATTACGGAAAGTGATTCGAGCCAAAGGCTTAAAGAAGAATCCTGGCTGCAGCTGGTTTGAAGGAAAGAAAGGGGACATTCATGAATTCTTTGCGGATGATGCAACCCATCAACGATCAAGTGAGATTAGACAAGCCTTGAGGCAACTCCTTGTGAGATTAAGAGCCCATGGATACAAGCCAAACTTGAGCTCTGTGCCTTATGACTTGACCGATGATGAAAAGGAACGAATACTGATGAGTCATAGTGAGAAGCTGGCGTTGGCATACGGGATGTTATGTACTGAGGCAGGGGAAACCATTACGATCATGAAAAACCTTAGGATATGCGAGGATTGCCACAATGTCATGTGTGCTGCATCTGAAATCACTGGAAGGGAGATCATTATAAGGGATAACATGAGATTTCATCACTTCCACAATGGGACTTGTTCTTGTGGTAACTTTTGGTGA 1953 44.8 MIGLSRNFSTVCKLSYLQPRQTQATPNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRGNGVSPVSFTFSALFKACGASLNLDLGRQVHAQTILIGGFASDLYVGNTMIDMYVKCGVLGCGRKVFDEMSERDVVSWTELIVAYAKFGDMESARGLFDELPLKDMVAWTAMVTGYAQNARPKEALEYFQKMQDVGIETDEVTLVGVISACAQLGAVKYANWIRDIAERSGFGPYEHVMVGSALIDMYSKCGSPDEAYKIFEGMKERNVFSYSSMIVGYAMHGRAHSALQLFHEMLKTEIRPNKVTFIGVLSACSHAGMVEQGRQLFAKMEKYFNVTPSPDHYACMVDLLGRGGCLEEALELIETMPMEPHGGVWGALLGACRIHGNPNIAQVAADQLFKLEPDGIGNYILLSNIYASAGRWEEVSKLRKVIRAKGLKKNPGCSWFEGKKGDIHEFFADDATHQRSSEIRQALRQLLVRLRAHGYKPNLSSVPYDLTDDEKERILMSHSEKLALAYGMLCTEAGETITIMKNLRICEDCHNVMCAASEITGREIIIRDNMRFHHFHNGTCSCGNFW 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3265872 3267824 - CmaCh16G006330.1 Cma16g00633 311231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00633 650 PANTHER BNAC09G18050D PROTEIN 12 633 - -
Cma16g00633 650 TIGRFAM PPR: pentatricopeptide repeat domain 109 140 IPR002885 -
Cma16g00633 650 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Cma16g00633 650 TIGRFAM PPR: pentatricopeptide repeat domain 241 274 IPR002885 -
Cma16g00633 650 TIGRFAM PPR: pentatricopeptide repeat domain 379 410 IPR002885 -
Cma16g00633 650 TIGRFAM PPR: pentatricopeptide repeat domain 182 210 IPR002885 -
Cma16g00633 650 TIGRFAM PPR: pentatricopeptide repeat domain 317 343 IPR002885 -
Cma16g00633 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Cma16g00633 650 Pfam E motif 459 521 IPR046848 -
Cma16g00633 650 Pfam PPR repeat 417 441 IPR002885 -
Cma16g00633 650 Pfam PPR repeat 182 208 IPR002885 -
Cma16g00633 650 Pfam PPR repeat 210 236 IPR002885 -
Cma16g00633 650 Pfam PPR repeat 109 138 IPR002885 -
Cma16g00633 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cma16g00633 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Cma16g00633 650 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 633 - -
Cma16g00633 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cma16g00633 650 Pfam PPR repeat family 341 389 IPR002885 -
Cma16g00633 650 Pfam PPR repeat family 238 286 IPR002885 -
Cma16g00633 650 Pfam DYW family of nucleic acid deaminases 558 650 IPR032867 GO:0008270
Cma16g00633 650 Gene3D Tetratricopeptide repeat domain 301 550 IPR011990 GO:0005515
Cma16g00633 650 Gene3D Tetratricopeptide repeat domain 43 193 IPR011990 GO:0005515
Cma16g00633 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 341 IPR002885 -
Cma16g00633 650 Gene3D Tetratricopeptide repeat domain 197 300 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00633 - - - csv:101203412 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00633 Cma-Chr16:3265872 Cma13g00072 Cma-Chr13:566385 5.01E-24 dispersed
Cma16g00633 Cma-Chr16:3265872 Cma06g01402 Cma-Chr6:9057700 9.77E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1035 . . . . . . . . . Cmo16g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01258 . . . . . . . Bma03g00979 . . . . Cma16g00633 . . . . Cpe14g00540 . . . . . . . Cla07g00830 . . . . . . Lsi07g00239 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012740 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00633 Cma_Chr16 FPKM 2.954941 3.375668 3.294132 3.53671 4.397092 6.411452 5.95164 3.0811 3.276634 3.030447