Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00634 ATGGCTATGTCTCTGAGCTTTGTCTTTGCTTTGGCTCTTCTTGCCATGGCTTCTGGTGGGTTGTCTCACAAGATTGGCGGCGGTGGGGGCGGCGGCGGGGGTGGTGGTGGTGGTGGTGGGGGTGGTGGGTATTATTTGTATTCACAATTCTATGACCATTCTTGTCCAAGAGCTCAAGAGATAGTGAAGTACATAGTGGGTAAGGCTTTTGCTAAGGATCCTCGCATGGCTGCTTCCTTGCTTAGGCTTCATTTCCATGATTGCTTTGTTAAGGGCTGTGATGCCTCACTGTTGTTAGATAGTAGCGGGACAATAACGAGCGAGAAAAGGTCAAATCCAAATAGAAACTCCGCCCGAGGCTTCGAAGTTATTGACGAGATCAAATCCGCCTTGGAAAAAGAGTGTCCTCGCACCGTTTCTTGTGCTGATATCTTGGCCATTGCTGCTAGAGACTCGACCGTCATAACAGGAGGACCCAGTTGGGAGGTTCCATTAGGGAGAAGAGACTCAAGAGGAGCTAGCCTTAGTGGCTCAAACAACGCCATTCCAGCTCCAAACAACACTTTTCAAACCATTCTCACAAAGTTCAAGAGACAAGGCCTCGACATAGTCGATCTTGTCGCTCTTTCAGGAAGTCACACCATTGGGAACTCTCGATGTACTAGCTTTAGACAACGGCTCTACAACCAATCTGGCAATGCCAAGCCCGACCCGTCACTCGACCCATCGTATGCGGCGGAATTGCGCCAACAATGCCCGAGATCAGGGGGCGATCAGAACCTGTTTTTCCTAGACTTCGTCAGCCCGACCAAATTCGACAACTACTACTTCAAGAACCTTTTGGCTGGGAAGGGACTACTGAACTCGGATGAAGTTCTGTTGACAAAGAACCAAGAGTCCGCGGAGTTGGTGAAGACATATGCAGAGAATTCGGAGATGTTTTTCGAGCAGTTTGCGAGGTCGATGGTTAAGATGGGGAACATTTCTCCGCTCACCGGTTCGAGGGGGGAGATCAGAAAGCATTGTAGGAGAGTTAACAAAGATTAG 1047 49.28 MAMSLSFVFALALLAMASGGLSHKIGGGGGGGGGGGGGGGGGGYYLYSQFYDHSCPRAQEIVKYIVGKAFAKDPRMAASLLRLHFHDCFVKGCDASLLLDSSGTITSEKRSNPNRNSARGFEVIDEIKSALEKECPRTVSCADILAIAARDSTVITGGPSWEVPLGRRDSRGASLSGSNNAIPAPNNTFQTILTKFKRQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQSGNAKPDPSLDPSYAAELRQQCPRSGGDQNLFFLDFVSPTKFDNYYFKNLLAGKGLLNSDEVLLTKNQESAELVKTYAENSEMFFEQFARSMVKMGNISPLTGSRGEIRKHCRRVNKD 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3271830 3273908 + CmaCh16G006340.1 Cma16g00634 311232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00634 348 Gene3D Peroxidase, domain 2 183 325 - -
Cma16g00634 348 PANTHER PEROXIDASE 72-RELATED 44 346 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 SUPERFAMILY Heme-dependent peroxidases 46 346 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 ProSitePatterns Peroxidases proximal heme-ligand signature. 205 215 IPR019793 -
Cma16g00634 348 Gene3D - 50 346 - -
Cma16g00634 348 PRINTS Plant peroxidase signature 55 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 79 99 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 119 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 138 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 157 172 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 204 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 263 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 279 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Plant peroxidase signature 320 333 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 Pfam Peroxidase 65 310 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 ProSiteProfiles Plant heme peroxidase family profile. 45 346 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Haem peroxidase superfamily signature 77 91 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Haem peroxidase superfamily signature 139 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Haem peroxidase superfamily signature 157 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Haem peroxidase superfamily signature 205 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PRINTS Haem peroxidase superfamily signature 265 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma16g00634 348 PANTHER PEROXIDASE 44 346 - -
Cma16g00634 348 ProSitePatterns Peroxidases active site signature. 77 88 IPR019794 GO:0004601
Cma16g00634 348 CDD secretory_peroxidase 50 345 IPR033905 GO:0004601|GO:0042744
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00716 Cma16g00634 CCT
Cma03g00716 Cma16g00634 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00634 Cma-Chr16:3271830 Cma20g00313 Cma-Chr20:1550512 1.24E-108 dispersed
Cma20g00049 Cma-Chr20:220046 Cma16g00634 Cma-Chr16:3271830 4.15E-96 dispersed
Cma02g00457 Cma-Chr2:2382899 Cma16g00634 Cma-Chr16:3271830 3.72E-96 transposed
Cma02g00675 Cma-Chr2:4138381 Cma16g00634 Cma-Chr16:3271830 1.27E-85 transposed
Cma04g00815 Cma-Chr4:4177279 Cma16g00634 Cma-Chr16:3271830 2.74E-99 transposed
Cma08g01288 Cma-Chr8:7797609 Cma16g00634 Cma-Chr16:3271830 4.22E-111 transposed
Cma19g00444 Cma-Chr19:5397025 Cma16g00634 Cma-Chr16:3271830 3.00E-43 transposed
Cma19g01104 Cma-Chr19:9131066 Cma16g00634 Cma-Chr16:3271830 1.49E-72 transposed
Cma16g00634 Cma-Chr16:3271830 Cma03g00716 Cma-Chr3:5790882 0 wgd
Cma16g00634 Cma-Chr16:3271830 Cma04g00767 Cma-Chr4:3896086 0 wgd
Cma16g00634 Cma-Chr16:3271830 Cma07g00464 Cma-Chr7:2019481 4.02E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00634 K00430 - csv:101223204 582.408