Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00639 ATGACTTTGGAAATGGAATCAAGCAACGATCCTGAGAATCAGATGATGATCGAAGGAAATATCGCTCAGAATATGAAGATTGATCCGGAGCGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCGTTCCTTTCATTGGTCACATCGGTATTGGCAGAGAGGATGGAGTAATCTTAGACTTCGCAGGCCCCAATTTTGTGTGTGTCGACAACTTCACATTTGGCGCAGTCGTTCGGTATCTTCAAATCAACAGCGACAAGTGTTGTTGCATTGTCACTCGCAGAAGTGAAGAAGATGAATTCAGAGAAGGAGAAATTTCAACATGGGATGATGCATTGCGGAGGAGCACTCAAGAGTTCCAACACCGATCCTACAATCTGTTGACTTGCAATTGTCATTCCTTCGTGGCTAATAATCTAAACAGACTTGGGTTTCGCACAGGTGGATGGAATGTGGTGAACCTTGCTGCTCTGATCTTTCTCAAGGGTCGGTGGGTTAGTAAAGGAGCTGTAATCAGGACGTTGTTACCATTTGTTGTGGTATTCAGTATTGGACTCGCACTGGGCGGTACTACTTTCCTTACCTTCTTGGCATTCTTCAATGTCTTCCTGGTTGGTTGGTTCATTCTTGGTACTTATGTCTTCAAAAACTTGGTTCAGTTGTAA 687 44.25 MTLEMESSNDPENQMMIEGNIAQNMKIDPERARFPCCIVWTPLPVISWLVPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVVRYLQINSDKCCCIVTRRSEEDEFREGEISTWDDALRRSTQEFQHRSYNLLTCNCHSFVANNLNRLGFRTGGWNVVNLAALIFLKGRWVSKGAVIRTLLPFVVVFSIGLALGGTTFLTFLAFFNVFLVGWFILGTYVFKNLVQL 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3302128 3304473 - CmaCh16G006390.1 Cma16g00639 311237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00639 228 PANTHER - 3 228 - -
Cma16g00639 228 Pfam Protein of unknown function (DUF778) 109 172 IPR008496 -
Cma16g00639 228 Pfam Protein of unknown function (DUF778) 43 95 IPR008496 -
Cma16g00639 228 PANTHER UNCHARACTERIZED 3 228 IPR008496 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00639 K20726 TMEM222; transmembrane protein 222 - csv:101222733 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01741 Cma-Chr1:11772069 Cma16g00639 Cma-Chr16:3302128 4.01E-63 dispersed
Cma09g00333 Cma-Chr9:1372949 Cma16g00639 Cma-Chr16:3302128 1.42E-75 dispersed
Cma16g00639 Cma-Chr16:3302128 Cma04g00768 Cma-Chr4:3897889 1.88E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1059 . . . . . . . . . Cmo16g00696 . . . . . . . . . . . . . . . . . . . . . Cone8ag0831 . . . . . Chy07g01264 . . . . . . . . . . . . Cma16g00639 . . . . Cpe14g00545 . . . . . . . Cla07g00837 Cam07g0906 Cec07g0959 Cco07g0949 Clacu07g0881 Cmu07g0881 Cre07g1242 Lsi07g00232 Csa04g00538 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011038 1 2 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00639 Cma_Chr16 FPKM 3.834682 3.97178 4.341597 3.464297 3.092704 4.476521 3.590672 3.243005 2.280717 3.210733