Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00640 ATGGCGGCGTTGCAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAACGGTTTGGTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCACTGGTGATGGTGAGATCCGGCGGAGATGGCGGTGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGAAATCAAGCGAAGAAAGATTGTGTTCATATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACTTGGGTACCCGCCTCCAAACGCCGTGAGCGGCTGATCAGTACTACCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCAACTTCTTCCGGGTTTGAAATAGGGAATTTCCCGGCGGAAATAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACTTTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTCACGACCACGGCCCTGATCAACAACAACACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGATTCCGCCGCACTACTGGATCCTCCGCCGTCATACCCAGCTCCACTCAGCAGCTACATCACCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAG 690 53.91 MAALQNYESFETEQQQQGGERFGYSGENSPARSSLVMVRSGGDGGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLISTTGGDSKRPRDTHATSSGFEIGNFPAEINSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILHDHGPDQQQHHHNPPISASPDGGALLITTADSAALLDPPPSYPAPLSSYITAGTQFFQPPTS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3315182 3316512 - CmaCh16G006400.1 Cma16g00640 311238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00640 229 MobiDBLite consensus disorder prediction 99 118 - -
Cma16g00640 229 MobiDBLite consensus disorder prediction 99 113 - -
Cma16g00640 229 MobiDBLite consensus disorder prediction 1 30 - -
Cma16g00640 229 PANTHER PROTEIN SHORT INTERNODES 19 226 - -
Cma16g00640 229 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 19 226 IPR007818 GO:0003700|GO:0006355
Cma16g00640 229 MobiDBLite consensus disorder prediction 168 189 - -
Cma16g00640 229 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 123 172 IPR006511 -
Cma16g00640 229 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 51 93 IPR006510 -
Cma16g00640 229 Pfam Domain of unknown function (DUF702) 50 173 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00708 Cma16g00640 CCT
Cma07g00452 Cma16g00640 CCT
Cma03g00708 Cma16g00640 ECH
Cma07g00452 Cma16g00640 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00640 Cma-Chr16:3315182 Cma19g00283 Cma-Chr19:2141068 4.12E-50 dispersed
Cma16g00640 Cma-Chr16:3315182 Cma03g00708 Cma-Chr3:5754845 8.35E-62 wgd
Cma16g00640 Cma-Chr16:3315182 Cma04g00769 Cma-Chr4:3906567 1.18E-97 wgd
Cma16g00640 Cma-Chr16:3315182 Cma07g00452 Cma-Chr7:1973447 9.96E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36555 PF05142 DUF702 5.40E-50 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00640 - - bhj:120073083 303.908