Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00644 ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAACTCTGTTTTCGTGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTCGTCGACCAACTCCTCGATTTCTCCAATGATGACCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCATGACGACTCTGTTTCTCTTTCCGGTCAAGAAATTCATCCGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGCAACCGGGCAACGGTGGTTCTATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAAGCAAACGAACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAGCGTCGGAGCTCAGCCTCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG 957 52.14 MECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGQEIHPNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3349745 3351028 + CmaCh16G006440.1 Cma16g00644 311242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00644 318 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 MobiDBLite consensus disorder prediction 70 85 - -
Cma16g00644 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
Cma16g00644 318 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 MobiDBLite consensus disorder prediction 181 246 - -
Cma16g00644 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cma16g00644 318 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 MobiDBLite consensus disorder prediction 135 166 - -
Cma16g00644 318 CDD ZnF_GATA 238 286 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 Gene3D - 231 306 IPR013088 GO:0006355|GO:0008270
Cma16g00644 318 MobiDBLite consensus disorder prediction 181 201 - -
Cma16g00644 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cma16g00644 318 MobiDBLite consensus disorder prediction 50 88 - -
Cma16g00644 318 PIRSF Txn_fac_GATA_plant 8 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma16g00644 318 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00644 - - - cmax:111483139 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00364 Cma-Chr2:1797272 Cma16g00644 Cma-Chr16:3349745 6.26E-60 dispersed
Cma16g00644 Cma-Chr16:3349745 Cma20g00811 Cma-Chr20:3817823 2.36E-52 dispersed
Cma18g00893 Cma-Chr18:7718862 Cma16g00644 Cma-Chr16:3349745 5.11E-37 dispersed
Cma16g00644 Cma-Chr16:3349745 Cma03g00704 Cma-Chr3:5744191 4.29E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00584 . 76 341 C2C2-Gata Transcription Factor Family AT5G25830 55.3 2.0e-65 246.9
Cma16g00644 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.8 1.3e-62 237.7
Cma03g00704 CCT,ECH 99 282 C2C2-Gata Transcription Factor Family AT5G66320 50.5 1.3e-43 174.5
Cma06g00812 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 3.9e-132 469.2
Cma16g01108 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 51.4 4.3e-131 465.7
Cma19g00400 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.6 2.0e-128 456.8
Cma02g01569 . 633 1129 C2C2-Gata Transcription Factor Family AT4G17570 51.6 6.1e-125 445.3
Cma06g00812 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.8 9.8e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36557 PF00320 GATA 1.40E-15 CL0167 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00644 Cma_Chr16 FPKM 8.779276 10.209605 22.091501 20.856743 28.272791 20.909441 26.270002 0.891186 0.528205 0.373502