Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00644 ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAACTCTGTTTTCGTGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTCGTCGACCAACTCCTCGATTTCTCCAATGATGACCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCATGACGACTCTGTTTCTCTTTCCGGTCAAGAAATTCATCCGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGCAACCGGGCAACGGTGGTTCTATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAAGCAAACGAACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAGCGTCGGAGCTCAGCCTCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG 957 52.14 MECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGQEIHPNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3349745 3351028 + CmaCh16G006440.1 Cma16g00644 311242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00644 318 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 MobiDBLite consensus disorder prediction 70 85 - -
Cma16g00644 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
Cma16g00644 318 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 MobiDBLite consensus disorder prediction 181 246 - -
Cma16g00644 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cma16g00644 318 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 MobiDBLite consensus disorder prediction 135 166 - -
Cma16g00644 318 CDD ZnF_GATA 238 286 IPR000679 GO:0006355|GO:0043565
Cma16g00644 318 Gene3D - 231 306 IPR013088 GO:0006355|GO:0008270
Cma16g00644 318 MobiDBLite consensus disorder prediction 181 201 - -
Cma16g00644 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cma16g00644 318 MobiDBLite consensus disorder prediction 50 88 - -
Cma16g00644 318 PIRSF Txn_fac_GATA_plant 8 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma16g00644 318 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00364 Cma-Chr2:1797272 Cma16g00644 Cma-Chr16:3349745 6.26E-60 dispersed
Cma16g00644 Cma-Chr16:3349745 Cma20g00811 Cma-Chr20:3817823 2.36E-52 dispersed
Cma18g00893 Cma-Chr18:7718862 Cma16g00644 Cma-Chr16:3349745 5.11E-37 dispersed
Cma16g00644 Cma-Chr16:3349745 Cma03g00704 Cma-Chr3:5744191 4.29E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36557 PF00320 GATA 1.40E-15 CL0167 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00644 - - cmax:111483139 578.941