Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00646 ATGGATACCCATTTGGAGGAGCTAAGGCAAAGCTTCAGAAATGGAAGAACAAGGAGCTTAGAATGGAGGAAAAAACAGCTGATTTCACTGATTCAGTTCATTCAAGACAAAGAAAACGCCATTTTTGAAGCTCTCTTCCAAGATCTTGGGAAGCATCCTGTCGAAATTTATCGAGATGAGGTTGGAATCGTTTTAAAATCTGCAAACAACGCTCTCTCTTGTTTACACAAATGGATCGCCCCTAAAAAGAAATACGTGCCATTACTGTTCTTCCCAGCAAAAGGGGAAGTGTTGCCTGAGCCATATGGTCTAGTCCTCATAATTTCATCATGGAACTTCCCCCTTTCTTTGGCATTGGATCCGTTAATCGGAGCGATATCAGCAGGCAACACGGCGGTTCTAAAACCGTCGGAGTACGCTCCGGCGTGCTCGTCTCTTCTCGCTGCGACGCTTCCTCTTTACCTCGACGATAAAGCCATCAAGGTCGTGGAGGGCGGAGCTGATATCAGTGAACAGCTTCTGCAGCAGAAGTGGGATAAGATCTTCTTCACTGGTAGTCCAAGTGTAGCTAAGATTGTGATGTCTGAAGCTGCAAAGCATCTAACTCCTGTAACATTGGAGCTTGGGGGAAAGTGTCCTGCAATCTTTGATTACTCCTCTGTTCATTCCAGTATGAAGGTTGCTGCTAAGAGAATTGTCGGAGGAAAATGGGGACCGTGCTCGGGTCAGGCGTGTATAGGGATCGATTACTTGCTTGTCGAGGACAAGTTTGCTTCAGAATTGATCGAGTCGTTAAAGCGAGTGTTGAAGAAGTTTTACGGTGAAAACTCGAGAAATTCGACGAGTATAGCTCGGATTGTTAATGAGAAACATGTTGAAAGGATCAGTAATATGCTTCATGACCCTAAGGTTGCTGGTTGTATTGTCCATGGTGGTTTAATAGACAAACAAAAACTCTTCATTGAGCCGACAATATTGTTGAATCCTCCGATCGATGCTGATATCATGACCGAAGAAATCTTCGGTCCCGTGCTACCGATAATAACGTTGGACAATATTGAAGAAAGCATCGAGTTCATCAATGCAAGACCGAAACCTCTAGCTATCTACGCCTTCACAGAAGACGAAACGCTAAAGAAACGGATTATATCCGAAACATCATCAGGAAGTGTCACGTTCAATGATACCATGGTTCAGGTACTGTCTCTCAAAGCAAGCTTTGCACTAAGCTGA 1233 44.2 MDTHLEELRQSFRNGRTRSLEWRKKQLISLIQFIQDKENAIFEALFQDLGKHPVEIYRDEVGIVLKSANNALSCLHKWIAPKKKYVPLLFFPAKGEVLPEPYGLVLIISSWNFPLSLALDPLIGAISAGNTAVLKPSEYAPACSSLLAATLPLYLDDKAIKVVEGGADISEQLLQQKWDKIFFTGSPSVAKIVMSEAAKHLTPVTLELGGKCPAIFDYSSVHSSMKVAAKRIVGGKWGPCSGQACIGIDYLLVEDKFASELIESLKRVLKKFYGENSRNSTSIARIVNEKHVERISNMLHDPKVAGCIVHGGLIDKQKLFIEPTILLNPPIDADIMTEEIFGPVLPIITLDNIEESIEFINARPKPLAIYAFTEDETLKKRIISETSSGSVTFNDTMVQVLSLKASFALS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3361502 3363315 + CmaCh16G006460.1 Cma16g00646 311244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00646 410 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 9 209 IPR016162 GO:0016491
Cma16g00646 410 PIRSF ALDH 1 408 IPR012394 GO:0006081
Cma16g00646 410 PANTHER ALDEHYDE DEHYDROGENASE 4 402 IPR012394 GO:0006081
Cma16g00646 410 SUPERFAMILY ALDH-like 2 402 IPR016161 GO:0016491
Cma16g00646 410 Pfam Aldehyde dehydrogenase family 9 399 IPR015590 GO:0016491
Cma16g00646 410 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 210 407 IPR016163 GO:0016620
Cma16g00646 410 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER F1 4 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00785 Cma-Chr9:3798961 Cma16g00646 Cma-Chr16:3361502 7.53E-136 dispersed
Cma16g00646 Cma-Chr16:3361502 Cma17g00366 Cma-Chr17:2030351 4.19E-32 dispersed
Cma16g00646 Cma-Chr16:3361502 Cma09g00784 Cma-Chr9:3790911 2.02E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00646 K00128 - csv:101221321 690.263