Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00649 ATGAGAGTTCCTGTTTCCAATCACCACTCATCCAAACCATCCTCTGCTCCTACACCAAATCCTAAGCTCGACTCCTCCCCCTCCCCCACCGCCTTCCGCCCCCCCACCACCACCGCCACCACCGCCACCCCCGGTTACGAACCCACCTCCGTTCTAGATCTCCGCCGTAGCCCCAGCCCCGTGGCGCCAGATAACCCTCTCTCCTCCGCCGACGACCGTCACAACAACAGCCATCCTCTGGACTGGGATGAACGCACTCTCCAGAACCTTGACTGGGAATCCATCATGGGCGATTTGGGCGTAAACGATGACTCCAATTCTGCTCTCAAGAACACCACCGCCGCCACCACCACCACCACCGACGACAATACCCACGATCATGTTCCTCACTTTTCCGAATTCCTTCACTCCCAGCCGTTCGATCAAACCGCCCACCTCCTCCCCTCTGATTTCTTCCTCTCCGAACCATATTCCAATCACTCCGCCGCCATGCTCCACCAGACCTTCGATTTCGCCCCCAATTCCAACGACCCATCTCTCCATTTCCTCGAAGATCTCGTCGACGCCGCCGATTGCTTCGATTCCAATGATTTCCACCTCGCTCACGTCATACTAGAGCGGCTCAATCACCGCCTTCAATCCGCCTCCTCCGCCAAACCTCTTCACCGGGCCGCCTTCTTCTTCAAAGAAGCTCTTCAATCTCTCCTCTCCACCTCCGCCACCCGCCATAACTCCTCCTCTTCCTGGCCCGACATCGTCCATACTATTAAGGCCCATAAGGCCTTCTCTGCAATTTCTCCGATTCCCCTGTTTTCCCACTTCACCACCAATCAAATCCTTCTCGAAGCTCTCAACGCTTCCTCTTTCATTCATATAATTGATTTCGACATCGGATTTGGTGGGCAATACGCCTCTTTCATGAAGGAGATAGCTGATAAAGCAGAATCAAGAAACGTTGTTCCGCCAGTGATTCGAATTACCGCCGTCGTGTTTGAGGAATTTGCGGTGGAGAGTCGGTTGACTAGAGAGAATCTCTGCCAGTTTGCTCAAGATTTGAAGCTCCGATTTCATATTGATCTTGTGCCGCTTCAGACTTTCAAGACGTTATCTTTCAAATCGGTGAAATTCATGGAAGGGGAGAAGGTGGCGATTCTGTTAACTCCGACCATCTTCCGCCGTCTCGGGAGTTCTAATGGCATAGCCTCTTTTCTCGCCGACGTGCGATTAGTGTCTCCGTGCGTCGTCGTGTTTGTCGATTTCGAAGGGTGGTCGGACTCCGGCAAGGCGTCGTTCAAGAGGAATTTGTTGGATAGTCTGGAGTTTTACGCCATGATGCTCGAGTCGCTGGACGCGGCAGGGGCCGACGGCGAGTGGGTGCGGCGGATTGAGACGTTTGTTCTTCGGCCGAAGATCTTGGCGGCGGTCGAAGGAGCAGGGAGAATGGCGGTGCCGCTGTGGAGGGAGGTGTTCCACTCGGTCGGGATGAGGCCGGTGGCGCTGAGTCAGTTTGCTGATTTTCAAGCGGAATGCTTACTTGGCAAAGTACAGGTCCGAGGGTTCCAAGTTGGCAAACGGCATGCTGAGCTGGTGCTGTGCTGGCATGAGAGACCTCTGGTCGCCACGTCCGCGTGGAGGTGTTAG 1641 54.72 MRVPVSNHHSSKPSSAPTPNPKLDSSPSPTAFRPPTTTATTATPGYEPTSVLDLRRSPSPVAPDNPLSSADDRHNNSHPLDWDERTLQNLDWESIMGDLGVNDDSNSALKNTTAATTTTTDDNTHDHVPHFSEFLHSQPFDQTAHLLPSDFFLSEPYSNHSAAMLHQTFDFAPNSNDPSLHFLEDLVDAADCFDSNDFHLAHVILERLNHRLQSASSAKPLHRAAFFFKEALQSLLSTSATRHNSSSSWPDIVHTIKAHKAFSAISPIPLFSHFTTNQILLEALNASSFIHIIDFDIGFGGQYASFMKEIADKAESRNVVPPVIRITAVVFEEFAVESRLTRENLCQFAQDLKLRFHIDLVPLQTFKTLSFKSVKFMEGEKVAILLTPTIFRRLGSSNGIASFLADVRLVSPCVVVFVDFEGWSDSGKASFKRNLLDSLEFYAMMLESLDAAGADGEWVRRIETFVLRPKILAAVEGAGRMAVPLWREVFHSVGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWRC 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3374122 3375762 - CmaCh16G006490.1 Cma16g00649 311247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00649 546 MobiDBLite consensus disorder prediction 7 47 - -
Cma16g00649 546 MobiDBLite consensus disorder prediction 1 81 - -
Cma16g00649 546 Pfam GRAS domain family 184 545 IPR005202 -
Cma16g00649 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 545 IPR005202 -
Cma16g00649 546 PANTHER SCARECROW-LIKE PROTEIN 15 27 545 - -
Cma16g00649 546 ProSiteProfiles GRAS family profile. 173 545 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00649 - - - csv:116401665 820.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00649 Cma-Chr16:3374122 Cma16g01144 Cma-Chr16:8784996 2.99E-70 dispersed
Cma16g00649 Cma-Chr16:3374122 Cma04g00774 Cma-Chr4:3941102 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g933 Blo04g00926 . . . Bpe15g00438 . . . Cmo04g00840 Cmo16g00706 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0754 . . . . Chy07g01294 . . . . . . . . . . . . Cma16g00649 . . . . Cpe14g00553 . . . . . . . Cla07g00854 Cam07g0926 Cec07g0991 Cco07g0968 Clacu07g0901 Cmu07g0901 Cre07g1267 Lsi07g00218 Csa04g00523 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004174 0 0 1 0 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36558 PF03514 GRAS 6.60E-86 CL0063 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00649 Cma_Chr16 FPKM 7.365022 8.733598 21.202114 23.980774 2.964716 2.743883 2.978337 4.423357 3.879459 3.985217