Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00651 ATGCCGACGGATTTAGAAACTTCCGGTGAAGCCAGTATCTCCTCCACTGGAAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAGAAGCGTAACTTACCAGGAATGCCAGATCCGGAAGCAGAGGTAATTGCTCTGTCTCCGGAAACCCTTTTGGCCACAAATCGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTACACCGGCGAGGTCATAATCTTCCATGGAAACTCCGGCAACGAACGAGCAAAGAGGTGAAAAAGAAAGTGTATGTCTGCCCAGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGCCGGAAACACAGCGAGAAGAAGTGGAAGTGCGACCGGTGCTCCAAGAAATACGCAGTCAAGTCGGATTGGAAAGCCCATTCTAAAATTTGCGGCACCAGAGAGTACAGATGTGACTGTGAAACTGTGTTTTCAAGAAGAGATAGTTTCATCACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGCCGCCGTTACTCTGTCTCCGGCGACGGCGGAGATTCCTAATTTGGAGTCCGATCCCCAAGTTCAGCCACCGAGTTGTTCGTCTCCGCCGCCTACTGCTGCTTCTCTTTCCGCCACTTCCGCCGCCGCCCCAGTAGCTCCTCCATCATCCACTGAAGCGATATCTTCAATCTCGTCCATTCAGAAAAAAGCCTCGCCGGGAAATCCTCCGCAGCCGCTAGTAGAGTCACCAGGCAAAACGACCGTACCTAGCAATTCCAGCAGCAGCAACGCTACAGTATTGGCTAGCTTGTTTGCTTCACCCGCCGCATCACTGAGCTTACAGCCACCGCAGCAGCCCGGATTTTGCGACTTATTACGAGCCATGGCGCGACCCGATCGGGCGGCCGAAATAACATCGCCGTTGGTTTTTGAACCACTTTCTCTATGCCTATCGAACCACAGCGAATGGTCGCTTTTCGGAGCCGGAATCCAAGAAAGTCGCCCATACGTGCCGCCAACGCCACCGGCCATGTCCGCCACTGGGCTCCTGCAAAAGGCCGCTCAAATGGGTGCTGCTGCAGCGGCCAGCACATCAGTGTTTCGTGGATTTGGTTTGTCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1197 53.05 MPTDLETSGEASISSTGNQPPPPKSAVKKKRNLPGMPDPEAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHSEKKWKCDRCSKKYAVKSDWKAHSKICGTREYRCDCETVFSRRDSFITHRAFCDALTKEAAVTLSPATAEIPNLESDPQVQPPSCSSPPPTAASLSATSAAAPVAPPSSTEAISSISSIQKKASPGNPPQPLVESPGKTTVPSNSSSSNATVLASLFASPAASLSLQPPQQPGFCDLLRAMARPDRAAEITSPLVFEPLSLCLSNHSEWSLFGAGIQESRPYVPPTPPAMSATGLLQKAAQMGAAAAASTSVFRGFGLSSSSSSAQQGSL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3386134 3388705 - CmaCh16G006510.1 Cma16g00651 311249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00651 398 MobiDBLite consensus disorder prediction 1 40 - -
Cma16g00651 398 Pfam Zinc-finger of C2H2 type 57 79 - -
Cma16g00651 398 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cma16g00651 398 MobiDBLite consensus disorder prediction 218 253 - -
Cma16g00651 398 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 7 393 - -
Cma16g00651 398 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 393 - -
Cma16g00651 398 Gene3D Classic Zinc Finger 37 104 - -
Cma16g00651 398 MobiDBLite consensus disorder prediction 1 22 - -
Cma16g00651 398 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cma16g00651 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cma16g00651 398 MobiDBLite consensus disorder prediction 201 274 - -
Cma16g00651 398 SMART c2h2final6 57 79 IPR013087 -
Cma16g00651 398 SMART c2h2final6 133 153 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00762 Cma16g00651 CCT
Cma07g00501 Cma16g00651 CCT
Cma07g00501 Cma16g00651 ECH
Cma03g00762 Cma16g00651 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00501 Cma-Chr7:2157354 Cma16g00651 Cma-Chr16:3386134 1.45E-144 dispersed
Cma09g00169 Cma-Chr9:719687 Cma16g00651 Cma-Chr16:3386134 7.78E-110 dispersed
Cma12g00483 Cma-Chr12:2520186 Cma16g00651 Cma-Chr16:3386134 1.35E-116 dispersed
Cma16g00651 Cma-Chr16:3386134 Cma06g00370 Cma-Chr6:1719002 3.64E-110 dispersed
Cma16g00651 Cma-Chr16:3386134 Cma07g00499 Cma-Chr7:2152878 3.30E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36559 PF12874 zf-met 0.0027 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00651 K25869 - csv:101215476 548.51