Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00652 ATGAATCAACGTGATTTCTTGTTGATCCTTCCTTTGCAAATATTGGAAAAGGATAAGAAGGCCAAATGCAAAAAAAAACCTGACCTTCATCGGTTTTTATCGAGTTTGAGAACTTCAACAGTTGCAGAAGCTTCTCGCTGTTCATTCACCCCGAGAGAGGAACGCGTAGAAACCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAAACGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTCCGGAGCCGGAAGTTGCAGAGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGATGATGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGGGAAATCGACGTTCTGTTTACTCCTTCTCTTGATATCAATACGAAATTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTAAGAGTTAAACCCACCACTGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGACTTTGAAATCTTCATGGCAACCGCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGCTACACCTGAATCCTGTACATACAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCTGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTTTCAATGAGCCCGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAAAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCGCCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTTATGAACGAAATTTGTGTGTCCCATGCACAATTAAAGAGGTTCAAGGCAAAGCCAGCAACCAGATCTCCTCACTCTGCTGTACCAAATTCCAGCGCTGGGAACCTTCTTTGGCAGACTGAACACTCCTTAATGTCGTTGTGCAACACAAAAATTTTGAAATGTACAGACAAAGGTGATCCTTTGAGTGTTGGCAATGAACTAAGAGCTTCCGGCGTTGTTCTCTGCTTTGGTGGTGTCTTTTATTAA 2478 43.42 MNQRDFLLILPLQILEKDKKAKCKKKPDLHRFLSSLRTSTVAEASRCSFTPREERVETFRMDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKTEVVPKPEPQQPPTKLEPETPVPEPEVAEPDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVDDDDDPMEEDASEDMVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLNSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEECWIPLKYYGLESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSNAALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHAQLKRFKAKPATRSPHSAVPNSSAGNLLWQTEHSLMSLCNTKILKCTDKGDPLSVGNELRASGVVLCFGGVFY 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3391124 3401627 + CmaCh16G006520.1 Cma16g00652 311250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00652 825 Pfam RPC5 protein 179 560 IPR006886 GO:0005634|GO:0006351
Cma16g00652 825 PANTHER DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 174 552 IPR006886 GO:0005634|GO:0006351
Cma16g00652 825 MobiDBLite consensus disorder prediction 591 612 - -
Cma16g00652 825 MobiDBLite consensus disorder prediction 297 347 - -
Cma16g00652 825 MobiDBLite consensus disorder prediction 311 329 - -
Cma16g00652 825 MobiDBLite consensus disorder prediction 95 116 - -
Cma16g00652 825 MobiDBLite consensus disorder prediction 66 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00652 K14721 RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5 - csv:101212587 1078.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g939 Blo04g00924 . . . Bpe15g00435 . . . . Cmo16g00709 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01282 . . . . . . . Bma03g00995 . . . . Cma16g00652 . . . . Cpe14g00556 . . . . . . . Cla07g00858 Cam07g0930 Cec07g0995 Cco07g0971 Clacu07g0904 Cmu07g0904 Cre07g1272 Lsi07g00215 Csa04g00518 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008265 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 5 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00652 Cma_Chr16 FPKM 7.158809 7.29122 8.091381 8.752035 4.873466 4.786322 6.756378 21.535845 19.406824 20.101446