Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00653 ATGTCCTCCATCGCCACCCGCCACATCCGTCGTTTATCGACGGCAGCCACCACCACCGCCACCGCCACCGCAACCGCTGCTGTCAAGGCAACAGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACCGAGTATGATCCAGATAAAGCTCTGAACATTTACTCTTCTGTTTCCAGTCACTACACTTCCCCTGTCTCCTCTCGCTACGCTCAGGAAATCACCATTCGTCGCCTTGCAAAGTCTCGTCGATTCGACGACATCGAATCCCTGATCGAGTCCCATAAAAATGACCCGAAGATCACTCAGGAGCCCTTTTTATCCACCTTGATTCGATCCTACGGTCGAGCTGGTATGTTCGAGCACGCAATGAGGACTTATAATCAGATGGAAGATTTCGGCACTCCTCGATCGGCGATTTCCTTCAATGCGCTATTATGTGCATTTAACCATTCGAAGCAATTCGACAAAGTTCCTCAACTGTTCGATGAAATTCCGAAGAAATACAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTCAAATCCTATTGCGAATCCGGTTCTCCCGAGAAGGCCATGCAAATTGTAAGGGAAATGGAGGAAAACGATGTGGAGGTTACTGCGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGCGAGAGCGAAGAGGCAGAGAAAATCTGGAACAAGATGATATCAAAAGGGTGTGAACTCGATGTAGGGGCCTATAACGTAAGATTGATGCACGAGCACGGCAGCAAGCCAGAACACGTTGAAGCATTGATCGAGGAAATGGCTAATTCAGGTATGAAACCCGACACCATTAGCTATAATTACTTAATGACTTGTTATTGCAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGATAAATGGGTGTAACAAGAACGCTGCAACTTTTAGGACATTTATGTATTACCTCTGTAGAAATGGGGATTATGAAAAAGGGTATATGGTTTTCAAGGAGAGTGTGAAGGTTCATAAGATTCCTGATGTTAACACAGTGAAGTATTTGGTGGAGGGGCTAATGGAGAAGAAGAAGATGAAAGAGGCCAAGGGTTTAATCAGGACCATAAGGAAGAAGTTCCCTCCTGATTCTTTGAAGGCCTGGAGAAAAGTTGAGGAGGCTCTTGGTTTGGCTTCTTCTTCTTCTTCTTCTTCTAAGGCTGATGATGAAACTGAAGAATAA 1254 44.66 MSSIATRHIRRLSTAATTTATATATAAVKATATTSSSISISKAKSKLRTEYDPDKALNIYSSVSSHYTSPVSSRYAQEITIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSAISFNALLCAFNHSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCESGSPEKAMQIVREMEENDVEVTAVTFTTILDALYKKGESEEAEKIWNKMISKGCELDVGAYNVRLMHEHGSKPEHVEALIEEMANSGMKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASSSSSSSKADDETEE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3402575 3403828 + CmaCh16G006530.1 Cma16g00653 311251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00653 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Cma16g00653 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Cma16g00653 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Cma16g00653 417 SUPERFAMILY HCP-like 223 383 - -
Cma16g00653 417 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 7 407 - -
Cma16g00653 417 Pfam PPR repeat 113 139 IPR002885 -
Cma16g00653 417 Pfam PPR repeat 145 173 IPR002885 -
Cma16g00653 417 Gene3D Tetratricopeptide repeat domain 5 159 IPR011990 GO:0005515
Cma16g00653 417 Pfam PPR repeat 176 207 IPR002885 -
Cma16g00653 417 TIGRFAM PPR: pentatricopeptide repeat domain 181 214 IPR002885 -
Cma16g00653 417 TIGRFAM PPR: pentatricopeptide repeat domain 145 179 IPR002885 -
Cma16g00653 417 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Cma16g00653 417 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Cma16g00653 417 TIGRFAM PPR: pentatricopeptide repeat domain 321 347 IPR002885 -
Cma16g00653 417 TIGRFAM PPR: pentatricopeptide repeat domain 113 140 IPR002885 -
Cma16g00653 417 Pfam PPR repeat family 215 255 IPR002885 -
Cma16g00653 417 Pfam PPR repeat family 282 331 IPR002885 -
Cma16g00653 417 Gene3D Tetratricopeptide repeat domain 259 416 IPR011990 GO:0005515
Cma16g00653 417 Gene3D Tetratricopeptide repeat domain 160 258 IPR011990 GO:0005515
Cma16g00653 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Cma16g00653 417 PANTHER BNAA09G52830D PROTEIN 7 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00653 - - - cmos:111435912 743.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00136 Cma-Chr1:616277 Cma16g00653 Cma-Chr16:3402575 2.02E-12 dispersed
Cma16g00653 Cma-Chr16:3402575 Cma18g00248 Cma-Chr18:1316034 7.01E-66 dispersed
Cma16g00653 Cma-Chr16:3402575 Cma14g01344 Cma-Chr14:10468713 1.27E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00653 Cma_Chr16 FPKM 14.219298 16.073925 17.102535 15.683893 15.909067 17.770874 15.85292 17.499132 16.24861 17.235683