Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00655 ATGATTCTACGTTTATCATATCGGATTCAGGACAGACTAAAGTTTCTTCGATTTGCTACCGTGCATTTGGTTCGTTCTGCTTCCGGATTTTCGTCTTTGTGTTTGTTGAGCGGGCTGGAAATGGCTCTCGAGGAGAAACCAAGAGCTGATAATTCTGCAGAGTCACCGACCTCGGTTCTGGAAGACGAGGATATATGTAATGGGGAAAATGAGATCAAGTTAGAGGAAAAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAGAAATGGCAGAGGAGGAACAGAAATTGCTGGAAGCTCGGGTTAAGGATGAGGAGACCGAGAAACTTGAGGATTCAAAAGAATCTGCAAAGTTGAATGACAATCAGTTTACCAAATTGGATGAACTTCTCACTCAAACACAGTTGTACTCAGAATTTTTGCTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGAGAATAAATCTGTTGAGAAAAGTAATGTGCGTGGTTCAAAGAGGAAAGCTGCTCCACGTTATAATAATAGGAAGGCAAAAAGAGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCACGGTGAAGATGAGAACTTGACCGAGGAAGAAAGAATTGAGAAGGAGCAGAGTGAACTTGTACCTCTGTTGACTGGTGGCAAATTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTAATCTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATCTGAAAGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATTGAGATTTGTGCCCACAGTGAGTGCTATTATTTATCATGGTAACAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAAAACAATTGGACCTAACTTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAAGTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATAGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAATTGAAGTACATAACTGTTGAAAATAAACTGCTTCTTACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCGTTGTTGAACTTTATTTTACCAGATATTTTTTCCTCCAATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGAGTCATGCTGAAGAACAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGCAATACTGAGACCATTTCTACTTCGGAGAATGAAATCCGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATTATATTGTATGCAACCATGACCGAGTGTCAGAAGAACTTTCAGGAACATTTAATTAACAAGACGTTGGAAAGTCATCTCTCCGAGAAGGGATCAGGCCATGTTTTGAAAGGAAAGCTTAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGATCTACTGGAATCAGTTTTTGATGAATCATATACATATCCTCCTGTAGAGCAGATAGTAGAGCAGTGTGGCAAATTTCGCTTACTGGATAGATTGTTGACGCGACTGTTAGCACGCAAGCATAAAGTCCTTATCTTCTCTCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTAATGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAACTACAGGATATTCATTCTAAGCACCCGAGCTGGTGGTCTGGGTATTAACCTTACTGCAGCAGATACCTGTATACTGTATGACAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGATGTCACAGGATTGGTCAAACGAAACCCGTACACGTTTACAGACTTGCAACAGCTCAGTCTGTAGAGGGCCGCATTCTGAATAGGGCATTTAGTAAGTTGAAGCTTGAGCATGTTGTCATCGAGAAGGGGCAATTTCACCAGGAACGAACTAAACCCAACTCTGGAGCTATTATAGAGGAAGAGGATCTGCTGGCACTACTAAGGAAGGAAGATTCTGCTGAAGATAAGATGATACAAACAGACATTAGCGATGCTGATTTGGAGCGTATTTTAGACCGCTCCGACCTGCTTCCCCCGTCTGGTTCAGACGACGAGAAATTGAAAGTTTCTGGTGATTTATACCCCCTCAAAGGGCCTGGTTGGGAGGTGGTGATACCAACTTCAACAGGAGGGTTGGGGGATTCTGTTGCATGCAATTTTTGTGTGATAAGTAGCGCATTTTGTTCTCTCACATTCGCCAATAACCTGAGACTCGTTCCCTGGAAAAACAAACCCATTCCAAACCCCCACTTTCCGGCCTCCAGCGAGCTTCAAGAGCGGGGGAACCGCCGTCTTTTCTTCCATTTCTTTTACTCAGGCGATTGCAAAGGATTGGACGGAGGTGCTGAAGCAAGATGTGGCGCTGTGTTTCTCGTGGCCTTCGCGCTTCTTCTTCTTCCTTTTCCAGGAAATCGTCGCCTAATGATCACCTCAGATCTCACTTTTCTAGATTCTTCTCCGATTCGGTATGACCTTCCATCATATACGGCAGGTCGCTCCTCATATACTGTGGTTGATCACACATACGATGCGGTTGTGGTAGGAGCCGGTGGTGCAGGACTTCGAGCTGCTATAGGATTGTCAGAACATGGATTTAATACTGCCTGCATTACTAAGCTTTTCCCAACTCGATCTCACACTGTTGCAGCTCAGGGAGGTATTAATGCTGCACTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGCGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCAAAAGCAGTTATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGAGGGAAAAATATATCAACGTGCATTTGGTGGTCAGAGCCTCGACTTTGGAAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCTGACCGAACGGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAATTTTTTGTGGAATATTTTGCTTTGGATCTTTTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATACAGAGGATGGTACACTACATCGGTTCCAAGCTGCATCAACAATTTTAGCTACTGGGGGTTATGGCAGAGCATATTTCTCTGCAACCTCTGCTCATACCTGTACTGGAGATGGAAATGCCATGGTTGCACGTGCTGGGCTTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACAGGAATATATGGTGCTGGATGCCTTATTACTGAAGGATCTCGTGGTGAAGGAGGCATTCTTAGGAACAGTGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGACGTTGTCTCAAGATCCATGACGATGGAAATTCGGGAGGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTTCATTTAAATCACTTACCCCCTGAGGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAGCCCATTCCAGTGTTACCTACAGTGCATTATAATATGGGTGGAATTCCAACTAATCATCATGGAGAGGTAGTTACAATCAAGGGCAATGATCCAGATGCTGTAATTCCAGGATTGATGGCTGCTGGCGAGGCAGCTTGTGCCTCGGTTCATGGTGCCAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTAGCAGAGATCAGTAAACCAGGGGCAAAGCAAAAGCCGTTGGAAAATGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAATTAAGGAACGCAAATGGTTCACTTCCCACCTCAAATATTCGGTTGAACATGCAACGAATTATGCAAAACAATGCTGCTGTCTTCCGAACTCAGGAAACCTTGGAAGAAGGTTGCAAATTAATTGACACGGCATGGGAAAGTTTCCATGATGTGAAGGTCAAGGACAGGAGTTTAATATGGAACACTGATTTGATCGAGACAATTGAATTGGAAAATCTTTTGATCAATGCCTCTATTACCATGCACTCTGCTGAAGCCAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGATTTCACAACAAGAGATGATGAGAACTGGATGAAGCACACATTGGGATTCTGGGAGAATGAGAAGGTCAGACTGGACTATAGGCCAGTGCACATGAACACATTGGACGATGAGATGGAAACAATCCCTCCCAAGGCCCGTGTATACTGA 4518 43.47 MILRLSYRIQDRLKFLRFATVHLVRSASGFSSLCLLSGLEMALEEKPRADNSAESPTSVLEDEDICNGENEIKLEEKIILEAKNGDSSLISKEMAEEEQKLLEARVKDEETEKLEDSKESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEENKSVEKSNVRGSKRKAAPRYNNRKAKRAVAAMLTRSKEGEHGEDENLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEILRFVPTVSAIIYHGNKKQREEIRRKSMPKTIGPNFPIVVTSYEIAMSDAKKVLRHYNWKYLVVDEGHRLKNSKCKLLKELKYITVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKSHAEEQEETQENRKAQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIILYATMTECQKNFQEHLINKTLESHLSEKGSGHVLKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQIVEQCGKFRLLDRLLTRLLARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGNVKLDERKRQIQEFNDVNSNYRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILNRAFSKLKLEHVVIEKGQFHQERTKPNSGAIIEEEDLLALLRKEDSAEDKMIQTDISDADLERILDRSDLLPPSGSDDEKLKVSGDLYPLKGPGWEVVIPTSTGGLGDSVACNFCVISSAFCSLTFANNLRLVPWKNKPIPNPHFPASSELQERGNRRLFFHFFYSGDCKGLDGGAEARCGAVFLVAFALLLLPFPGNRRLMITSDLTFLDSSPIRYDLPSYTAGRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNTEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISKPGAKQKPLENDAGEKTIAWLDKLRNANGSLPTSNIRLNMQRIMQNNAAVFRTQETLEEGCKLIDTAWESFHDVKVKDRSLIWNTDLIETIELENLLINASITMHSAEARKESRGAHAREDFTTRDDENWMKHTLGFWENEKVRLDYRPVHMNTLDDEMETIPPKARVY 1505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3406102 3421367 + CmaCh16G006550.1 Cma16g00655 311253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00655 1505 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 956 965 IPR003952 GO:0016491
Cma16g00655 1505 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 922 1505 IPR014006 GO:0016627|GO:0022900|GO:0050660
Cma16g00655 1505 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 1150 1268 IPR027477 -
Cma16g00655 1505 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 1160 1263 IPR027477 -
Cma16g00655 1505 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 907 1505 IPR030664 -
Cma16g00655 1505 Gene3D succinate dehydrogenase protein domain 1456 1505 - -
Cma16g00655 1505 SMART ultradead3 225 420 IPR014001 -
Cma16g00655 1505 Pfam Fumarate reductase flavoprotein C-term 1374 1505 IPR015939 GO:0016491
Cma16g00655 1505 SMART helicmild6 580 664 IPR001650 -
Cma16g00655 1505 SUPERFAMILY FAD/NAD(P)-binding domain 912 1341 IPR036188 -
Cma16g00655 1505 Gene3D - 464 758 IPR027417 -
Cma16g00655 1505 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 1364 1505 IPR037099 GO:0016491
Cma16g00655 1505 Pfam FAD binding domain 922 1318 IPR003953 -
Cma16g00655 1505 Pfam SNF2-related domain 232 528 IPR000330 GO:0005524|GO:0140658
Cma16g00655 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 458 IPR027417 -
Cma16g00655 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 752 IPR027417 -
Cma16g00655 1505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 409 IPR014001 -
Cma16g00655 1505 Gene3D - 1345 1455 - -
Cma16g00655 1505 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 919 1505 IPR011281 GO:0006099|GO:0016627|GO:0050660
Cma16g00655 1505 Coils Coil 92 112 - -
Cma16g00655 1505 CDD SF2_C_SNF 540 674 - -
Cma16g00655 1505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 554 717 IPR001650 -
Cma16g00655 1505 Gene3D - 922 1329 IPR036188 -
Cma16g00655 1505 Pfam Helicase conserved C-terminal domain 554 664 IPR001650 -
Cma16g00655 1505 Gene3D - 230 459 IPR038718 -
Cma16g00655 1505 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 907 1505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00655 K19001 HELLS, DDM1; ATP-dependent DNA helicase K00234 csv:101214753 1348.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00046 Cma-Chr3:403627 Cma16g00655 Cma-Chr16:3406102 7.07E-39 dispersed
Cma04g02710 Cma-Chr4:18305968 Cma16g00655 Cma-Chr16:3406102 1.41E-68 dispersed
Cma15g00337 Cma-Chr15:1544774 Cma16g00655 Cma-Chr16:3406102 1.46E-68 dispersed
Cma16g00655 Cma-Chr16:3406102 Cma17g00255 Cma-Chr17:1309258 2.61E-129 dispersed
Cma04g00781 Cma-Chr4:3986626 Cma16g00655 Cma-Chr16:3406102 6.44E-110 transposed
Cma04g00782 Cma-Chr4:3991722 Cma16g00655 Cma-Chr16:3406102 5.10E-24 transposed
Cma04g00783 Cma-Chr4:3992403 Cma16g00655 Cma-Chr16:3406102 2.87E-47 transposed
Cma16g00655 Cma-Chr16:3406102 Cma04g00779 Cma-Chr4:3971220 3.95E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36560 PF00890 FAD_binding_2 1.90E-122 CL0063 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00655 Cma_Chr16 FPKM 61.739506 66.177338 68.556671 66.515602 54.76535 60.297958 53.765686 67.609039 66.532806 62.099594