Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00656 ATGGCGTATATGTGCGCAGACAGTGGCAATTTAATGGCAATTGCACAACAAGTAATCAAGCAAAAACAACAGCAGGACCAACAGCAACACCACCTTTCACCTCTTCTTCCTTGGACTAATTCCAATCCTTCCCCAACAATGGCTTCTTCTTCTTCTTCTCCTACTTTCACCTTTGGGATTTCAGGTTCCGCCTTCTCCGACCCGTTTCAGGTCGCCGGAGCTGCTGATTCTACCGACCAGCCTTTTCATTTCTCGAATTTGGAGCACCCTTCCACCGGGTTTAGATTCTTCCCTAATTTTGGCGGCGGTGGTGGTGGAGAGTTTGAATCTGATGAATGGATGGACAGTTTAGTCGGCGGTAGAGATTCCACGGATAGCTCCGATCTTCCGTCTGGTTGTGATGGTTATGGTGAGTTTGGTGGTCTCTATGGTGTGGATCCCTTTAATGGCTCTCAGCCGTCTCTGTTCTACCGAGAACTTCTCCCGGAAGGTTCGTACAAGACGAATAGTGTTCTGCCCCCGTTGCCTTCATCTCCACCACCAGTTAAGGATGCTAAAGTAGCCAATTCAATGTCGGGAAGTCTGCAGAAGAATAACGTCGTCGAAAGCTCGTCTAGTGCCCCGGAAATCGACTCCTCTTCGCCGCCGCTTCTGAAAGTCTTGCTCGATTGTGCGCGGCTCTGCGACTCCGAACCTGACCGAGCAGTAAAAACTCTTAATCGGATCAGTAAGTCGTTACGAGAACATGGAGATCCTATTGAACGAGTTGCGTTTCACTTCGGTGAGGCTCTTCGGAGCAGATTATCTCCGACGGCAATGAAGAACTGCTTGGTTACAACTGATAGCGACGCTAATTCCGAAGATTTCTTGCTCTCTTACAAAGCTTTGAACGATGCCTGTCCTTACTCGAAGTTCGCACATCTCACGGCCAACCAAGCGATTCTGGAAGCTACACAAACAGCCAGTAAAATACACATTGTCGACTTCGGAATCGTTCAGGGTGTTCAATGGGCTGCGCTTCTGCAGGCTTTAGCCACACGAGCCACCGGAAAGCCTATCAAAGTTCGTATCTCCGGAATACCCGCACCATCTCTCGGAGATTCACCGGCGGCATCTCTATGCGCCACTGGCAACAGACTCTCCGAGTTTGCAAAGCTTCTGGAACTGAATTTTGAGTTCGAACCGATTCTAACGCCGATTGAGGACCTAAACGAATCGAGCTTCCGCGTTCAATCGGATGAGGTGTTGGCCGTGAATTTCATGCTTCAATTATACAATCTCCTCGACGAAGTTCCGACTGTAGTTCATAATGCTCTCTTATTAGCGAAATCGCTGAGCCCTAAAATATTGACTCTCGGCGAGTACGAGGCGAGCTTGAACAGAGTCGAATTCTACAATCGCTTCAAGAACGCATTAAAATTCTACTCCGCCATTTTCGAATCGCTAGAGCCGAATTTGCCGCGAGACTCTCCAGAAAGACACCAGTTAGAAAAACAGTTACTCGGCCGTCGAATCGCTGACATAGTTGGATCTGAAGAAGAATCAGGAAGCAAGAGAAGAGTACGCATGGAAGCCAAAGAACAATGGAAGAATTTACTGGAAAGCTCCGGATTCAAACCTGTAGCACTCAGCCATTACGCCATTAGTCAGGCGAAAATACTTTTATGGAACTACAATTACAGTTCTCTTTACACACTGATCGAATCGACGCCAGAGTTTCTGTCTCTGGCATGGAACGACGTTCCTCTCTTAACTGTATCTTCTTGGCGTTGA 1773 47.94 MAYMCADSGNLMAIAQQVIKQKQQQDQQQHHLSPLLPWTNSNPSPTMASSSSSPTFTFGISGSAFSDPFQVAGAADSTDQPFHFSNLEHPSTGFRFFPNFGGGGGGEFESDEWMDSLVGGRDSTDSSDLPSGCDGYGEFGGLYGVDPFNGSQPSLFYRELLPEGSYKTNSVLPPLPSSPPPVKDAKVANSMSGSLQKNNVVESSSSAPEIDSSSPPLLKVLLDCARLCDSEPDRAVKTLNRISKSLREHGDPIERVAFHFGEALRSRLSPTAMKNCLVTTDSDANSEDFLLSYKALNDACPYSKFAHLTANQAILEATQTASKIHIVDFGIVQGVQWAALLQALATRATGKPIKVRISGIPAPSLGDSPAASLCATGNRLSEFAKLLELNFEFEPILTPIEDLNESSFRVQSDEVLAVNFMLQLYNLLDEVPTVVHNALLLAKSLSPKILTLGEYEASLNRVEFYNRFKNALKFYSAIFESLEPNLPRDSPERHQLEKQLLGRRIADIVGSEEESGSKRRVRMEAKEQWKNLLESSGFKPVALSHYAISQAKILLWNYNYSSLYTLIESTPEFLSLAWNDVPLLTVSSWR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3424282 3426054 + CmaCh16G006560.1 Cma16g00656 311254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00656 590 Pfam GRAS domain family 218 590 IPR005202 -
Cma16g00656 590 MobiDBLite consensus disorder prediction 22 53 - -
Cma16g00656 590 ProSiteProfiles GRAS family profile. 208 590 IPR005202 -
Cma16g00656 590 MobiDBLite consensus disorder prediction 193 212 - -
Cma16g00656 590 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 218 589 IPR005202 -
Cma16g00656 590 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 218 589 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00756 Cma16g00656 CCT
Cma07g00493 Cma16g00656 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00493 Cma-Chr7:2130556 Cma16g00656 Cma-Chr16:3424282 0 dispersed
Cma16g00656 Cma-Chr16:3424282 Cma04g02984 Cma-Chr4:19554944 4.20E-63 dispersed
Cma16g00656 Cma-Chr16:3424282 Cma04g00784 Cma-Chr4:3996533 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36561 PF03514 GRAS 7.10E-109 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00656 - - cmos:111435912 985.711