Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00661 ATGACGCTGGGGCTTATCAATGCGAACCCGGTGGTTCACGCCAAGAAGGAGCGGATCGCTCGCTCCGAGGAATTTCACGGCGACGACGCCGTTGATCCTCTCGAAATCTATGATTTCGTGAGGGATATTAGAGATCCGGAGCATCCGTATTCGTTAGAGCAGCTTAGTGTTCTTTCAGAGGAATCGATCACCGTTGATGAGAAGCTCGGGCGTATCCTGATTACTTTCACTCCGACTATCCAGCATTGTAGTATGGCGACTGTGATTGGCCTCTGTCTGAGAGTGAAACTTAAACACTTCTTCCCCCCACATTACAAGGTTGACATCAAAGTGTCTCCAGGATCCCACGCAAATGAAGAGTCAGTTAATAAGCAGCTAAATGACAAAGAAAGAGTTGCAGCTGCTTTGGAGAATCCAAATCTGCGTCAGCTTGTAGATGAATGCCTGGATTCCAGTGAGTTCTGA 465 47.96 MTLGLINANPVVHAKKERIARSEEFHGDDAVDPLEIYDFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKHFFPPHYKVDIKVSPGSHANEESVNKQLNDKERVAAALENPNLRQLVDECLDSSEF 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3444279 3447879 - CmaCh16G006610.1 Cma16g00661 311259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00661 154 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 35 124 IPR034904 -
Cma16g00661 154 Pfam Iron-sulfur cluster assembly protein 35 103 IPR002744 -
Cma16g00661 154 Gene3D - 28 117 IPR034904 -
Cma16g00661 154 PANTHER PROTEIN AE7-LIKE 1 1 153 - -
Cma16g00661 154 Gene3D - 118 149 - -
Cma16g00661 154 PANTHER UNCHARACTERIZED 1 153 IPR039796 GO:0106035
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00661 - - - csv:101210134 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00661 Cma-Chr16:3444279 Cma19g00211 Cma-Chr19:1392306 2.58E-55 dispersed
Cma16g00661 Cma-Chr16:3444279 Cma04g00786 Cma-Chr4:4005219 1.89E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g967 . Blo16g00042 . . . Bpe13g00447 . . Cmo04g00842 Cmo16g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01297 . . . . . . . . . . . . Cma16g00661 . . . . Cpe14g00564 . . . . . . . Cla07g00875 Cam07g0947 Cec07g1014 Cco07g0992 Clacu07g0922 Cmu07g0922 Cre07g1291 Lsi07g00197 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002873 1 4 2 1 2 1 3 1 2 1 1 2 2 1 2 3 2 1 4 1 1 0 1 1 1 1 2 4 2 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00661 Cma_Chr16 FPKM 17.263624 18.18667 21.381433 20.14957 11.47914 8.867889 11.216179 37.890953 40.230156 42.853642