Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00666 ATGCACAAGCGAAACCTCACAACCACCGTCAGCCCCGTCGGCAGCCCAACCTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCTAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACTGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTTGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCCGTCACCGACGAAATCCGCCGCCGCCACCGTCGAACAGATTATCCGTGGGAAATCGGCCAATCCGAATTCTAACCAAGGAGAAGACGAAGACAAGAGTGGAAGAAGGAAGGTGGGAAAGGAGATGCAACCTGTAGAACCATAA 540 49.81 MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPTKSAAATVEQIIRGKSANPNSNQGEDEDKSGRRKVGKEMQPVEP 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3471267 3476010 - CmaCh16G006660.1 Cma16g00666 311264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00666 179 SUPERFAMILY Histone-fold 29 155 IPR009072 GO:0046982
Cma16g00666 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cma16g00666 179 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cma16g00666 179 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cma16g00666 179 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cma16g00666 179 Coils Coil 108 128 - -
Cma16g00666 179 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 14 160 - -
Cma16g00666 179 Gene3D Histone, subunit A 21 169 IPR009072 GO:0046982
Cma16g00666 179 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma16g00666 179 MobiDBLite consensus disorder prediction 160 179 - -
Cma16g00666 179 MobiDBLite consensus disorder prediction 121 179 - -
Cma16g00666 179 MobiDBLite consensus disorder prediction 1 29 - -
Cma16g00666 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 160 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00666 Cma-Chr16:3471267 Cma20g00686 Cma-Chr20:3142972 2.99E-64 dispersed
Cma10g01088 Cma-Chr10:7192352 Cma16g00666 Cma-Chr16:3471267 2.92E-34 transposed
Cma16g00666 Cma-Chr16:3471267 Cma04g00791 Cma-Chr4:4031415 1.10E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36562 PF00808 CBFD_NFYB_HMF 4.20E-27 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00666 K08065 - csv:101214273 263.462