Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00670 ATGTCTATGTTTGAGCTCACTAATTACCCTAAACATGCTCCTTTTTCAATCCAACCTTCCTCTTCCTCCTCGCTTCCAGGAAGGATGGGATTATACGAGCCTATCCACCCAATTGGAATGTGGGGAGAAACTTTCCGAACCAATTTAGACGCATCATCCCTTCTAATGGAGGCCGATACAAAGTTGGAAAATCAGTCGGATGAGGCCTCACTCGGCTCACTTGGAGATCCTCACATTTATAACGGAAAGGATACCAAACGAAATGAAAAGATTCAAAGACGGCTCGCACAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTGCGAAAAAAGGCCTATATTAAGCAATTGGAATCGAGCCGCTTAAAACTCATCCAATTGGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTGGCTGGAGCCCGATTTGATAATAACCAGTCGGGTTTATCAGGAACCACAAATTCAGGCATCTCTGCATTTGAATCAGAGTATGAGCAATGGGTAGAGGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCAGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACATTACTTTAAATTCTTTCGCATGAAAGCTAAAGCTGCAAAAGCAGACGTCTCCTATATTATGTCAGGCATGTGGAAAACATCAGCTGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGAAGATACTGACCGATCAACAAGTTTCCGAAACTAGTAGCCTTACGAAATCGTGTTTACAAGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTCGCTGGTCAGCTGAGTGAAGGAAGTTATCCCCTACAGATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGCCTCCTTATTCTCGGGGAGTTTTTTCAACGACTCCGAGCATTGAGCTTGCTTTGGGCTAATCGTCCTTGCGAGCCTACATAG 1125 43.47 MSMFELTNYPKHAPFSIQPSSSSSLPGRMGLYEPIHPIGMWGETFRTNLDASSLLMEADTKLENQSDEASLGSLGDPHIYNGKDTKRNEKIQRRLAQNREAARKSRLRKKAYIKQLESSRLKLIQLEQELEKARQQGLLAGARFDNNQSGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKILTDQQVSETSSLTKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSYPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSLLWANRPCEPT 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3493420 3499043 - CmaCh16G006700.1 Cma16g00670 311268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00670 374 Gene3D - 88 139 - -
Cma16g00670 374 SUPERFAMILY Leucine zipper domain 90 132 IPR046347 GO:0003700|GO:0006355
Cma16g00670 374 SMART brlzneu 86 148 IPR004827 GO:0003700|GO:0006355
Cma16g00670 374 Pfam Seed dormancy control 176 251 IPR025422 GO:0006351|GO:0043565
Cma16g00670 374 Coils Coil 109 136 - -
Cma16g00670 374 Pfam bZIP transcription factor 88 123 IPR004827 GO:0003700|GO:0006355
Cma16g00670 374 PANTHER TRANSCRIPTION FACTOR TGA9 25 373 - -
Cma16g00670 374 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 88 132 IPR004827 GO:0003700|GO:0006355
Cma16g00670 374 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 93 108 IPR004827 GO:0003700|GO:0006355
Cma16g00670 374 ProSiteProfiles DOG1 domain profile. 159 369 IPR025422 GO:0006351|GO:0043565
Cma16g00670 374 PANTHER TRANSCRIPTION FACTOR TGA1 25 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g03005 Cma-Chr4:19651845 Cma16g00670 Cma-Chr16:3493420 1.71E-120 dispersed
Cma15g00040 Cma-Chr15:223090 Cma16g00670 Cma-Chr16:3493420 8.94E-120 dispersed
Cma16g00670 Cma-Chr16:3493420 Cma06g00025 Cma-Chr6:157073 5.87E-101 dispersed
Cma16g00670 Cma-Chr16:3493420 Cma04g00793 Cma-Chr4:4044330 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36565 PF14144 DOG1 1.90E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00670 K14431 - csv:116401613 608.216