Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00680 | ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTTATCATGTTCTCTCCTTCTAGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTCGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCACTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTCGAGGAGCTTCAACAAGAGGTTGCTACATTGAGACATGAGCTTCAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCAGATCCTTTTTCGTTTACATCGAATGGTGAAATAGAGTCATGTGAGAAGAATCTGCTTGACACATTGGCACGAATAGCTCAGAGGAAGAAAGATGTATTGAATAGTCATTTATCTCCATATGATCCACCGAATGGTATTCAGCTATATTTGGATTCACAAGATGGAATAGCGTCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAATGGGGGGCAAAACCAGAACCAAATTTGTGTGGCAGCTGAGTCGTCTTCGATTCCACAAAGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAACGCAAGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGTGACATGGGCAACCCGAACGACGATGGCTATTCACCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCATTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACAATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGCGGATTGA | 1026 | 44.05 | MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNAD | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3539095 | 3541078 | + | CmaCh16G006800.1 | Cma16g00680 | 311278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00680 | 341 | Gene3D | - | 13 | 90 | IPR036879 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 307 | - | - | |
Cma16g00680 | 341 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977|GO:0045944 | |
Cma16g00680 | 341 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | SUPERFAMILY | SRF-like | 2 | 81 | IPR036879 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | MobiDBLite | consensus disorder prediction | 312 | 341 | - | - | |
Cma16g00680 | 341 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 | 1 | 307 | - | - | |
Cma16g00680 | 341 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | Coils | Coil | 115 | 135 | - | - | |
Cma16g00680 | 341 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cma16g00680 | 341 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00792 | Cma-Chr1:4274400 | Cma16g00680 | Cma-Chr16:3539095 | 2.34E-22 | dispersed | |
Cma16g00680 | Cma-Chr16:3539095 | Cma14g01148 | Cma-Chr14:9009460 | 1.40E-22 | dispersed | |
Cma16g00680 | Cma-Chr16:3539095 | Cma01g00837 | Cma-Chr1:4573034 | 4.41E-23 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36566 | PF00319 | SRF-TF | 4.00E-24 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00680 | - | - | csv:101222576 | 560.836 |