Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00680 ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTTATCATGTTCTCTCCTTCTAGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTCGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCACTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTCGAGGAGCTTCAACAAGAGGTTGCTACATTGAGACATGAGCTTCAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCAGATCCTTTTTCGTTTACATCGAATGGTGAAATAGAGTCATGTGAGAAGAATCTGCTTGACACATTGGCACGAATAGCTCAGAGGAAGAAAGATGTATTGAATAGTCATTTATCTCCATATGATCCACCGAATGGTATTCAGCTATATTTGGATTCACAAGATGGAATAGCGTCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAATGGGGGGCAAAACCAGAACCAAATTTGTGTGGCAGCTGAGTCGTCTTCGATTCCACAAAGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAACGCAAGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGTGACATGGGCAACCCGAACGACGATGGCTATTCACCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCATTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACAATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGCGGATTGA 1026 44.05 MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNAD 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3539095 3541078 + CmaCh16G006800.1 Cma16g00680 311278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00680 341 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Cma16g00680 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma16g00680 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 307 - -
Cma16g00680 341 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cma16g00680 341 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma16g00680 341 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cma16g00680 341 MobiDBLite consensus disorder prediction 312 341 - -
Cma16g00680 341 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 307 - -
Cma16g00680 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma16g00680 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma16g00680 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma16g00680 341 Coils Coil 115 135 - -
Cma16g00680 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma16g00680 341 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00792 Cma-Chr1:4274400 Cma16g00680 Cma-Chr16:3539095 2.34E-22 dispersed
Cma16g00680 Cma-Chr16:3539095 Cma14g01148 Cma-Chr14:9009460 1.40E-22 dispersed
Cma16g00680 Cma-Chr16:3539095 Cma01g00837 Cma-Chr1:4573034 4.41E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36566 PF00319 SRF-TF 4.00E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00680 - - csv:101222576 560.836