Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00681 ATGTCCGTCGCCAACGCCGACATATCTCCAACTATGTTGGAGTCCTCGGCGGTCAGGGATATTCCCGCCCTTGACATCGACAAGTGCAGCCCAGCGGACAGGGCTCAGTGGGTGACAAACCCACCAGAGCCGCCGGGAATATGGCGAGACCTCCTCAACTCTCTCCGCGACACCATGTTTCCTAATCCGACCAAGCTTTTCTCCCCCAAAAGAAACACCGGAATTGCTCTGCTCGGTTCCCTTTTGCAGGCCTTCTTCCCTATCCTCTCATGGGGCCGGAGATACAGTCTCTCCATGTTCAAACACGACATCTTTGCCGGCCTGACCCTTGCCAGCCTCTGCATTCCCCAGAGCATTGGATATGCAAATCTGGCGAAGCTTGATCCACAATATGGCCTCTATACAAGCATTGTGCCGCCACTGGTTTATGCAGTATTGGGAACATCAAGGGAAATAGCCATCGGCCCAGTGGCCATAGTATCTCTGCTTTTACCGTCGCTGATCGGGAAAATTCAAGATCCCGCCGCCGACCCACTTGCCTACAGAAACCTCATCTTCACCACCACTTTCTTCGCCGGGATCTTCCAAGCCGCCTTTGGGTTCTTACGGCTGGGATTTTTGGTGGATTTTCTATCACATGCCGCCATTGTTGGGTTCATGGGGGGAGCTGCCATTGTTATTGGGCTTCAACAGCTCAAAGGATTGCTTGGCCTCACTCACTTCACTAACAAAACTGATATCATCTCTGTTATGGAAGCTGTGCTTGGATCATTCCGCCATGAAAATACTCGGTGGAACCCATTGAACTTCATCATTGGCTGCTCCTTCCTGTCGTTCATCCTCATCACCAGATTATTGGGGAAAAAGAACAAGAAATTATTCTGGTTAGCAGTCATAGCCCCACTGTTGTCTGTAATCCTCTCAACACTTTTGGTGTTCCTCACAAGAGCCGACCAGCACGGCGTCAAGATCGTCAAACGAGTCCCCGCCGGGCTCAACCCCATCTCCGCTTGCCACCTCCAATTCCACAGCCCTCAAATCTCCCAAATCGCCACCGCTGCCCTCATCGTTGCCGTTATAGCCCTCACAGAAGCTATTGCTGTCGGGAGATCCTTCGCCTCCATGAAAGGATACACCATTGATGGCAACAGAGAGATGGTTGCCTTAGGCTGCATGAACCTCGCCGGCTCTCTCACTTCTTGCTACACAGCCACCGGCTCCTTCTCCCGGACGGCCGTGAATTTCACTGCCGGTTGCCAGACGGCGGTTTCCAACATAGTAATGGCTGTGACGGTGATGATATCATTAGAGGTGTTAACTAAGCTTCTCTACTTCACTCCCAACGCCATTCTAGCCTCCATAATTCTGTCGGCACTTCCAGGCCTCATTGATTTTCATCAAGCTTACAATGTCTGGAAAATCGACAAGCTCGACTTCTTCGCCTGCCTCGGAGCCTTCCTCGGAGTCCTCTTTCTATCCGTCGAGTTCGGCCTCCTCCTCTCGATTGTGATATCATTTGCAAAGATAATACTAATCTCAATCAAACCTGGGACTGAGATTTTGGGTAAACTCCCTGGAACTGATACCTTTGGTGATATCCATCAATACCCAATGGCCCTCAACACTCCTGGAGTCCTCATCCTCCGTGTTAAATCTTCCTTACTTTGCTTCGCAAATGCCAATTTCATCAAGGACAGGATTCTGAGGATGATCAGCAGTGAAGAAGATACATCAGGAAAGAGAGCCATTCAATTCCTAGTGATTGATCTCTCAAATTTAATGAACATTGATACTTCTGGAATTGGTTCTCTCGAAGAGCTACAAAATGGTTTGGGAGGCAGTGGAGTAGAGTTGGCCATTGCAAACCCAAAATGGGAAGTGATTCATAAGCTAAGGGTAGCAAATTTTGTTGGGAAGCTGAAAGGGACGGTGTTCTTGAGTGTTGGGGAAGCTGTGGATGCATGTGTTGCAGCTAAATTGGGAGCCATGGTCTAA 1995 49.67 MSVANADISPTMLESSAVRDIPALDIDKCSPADRAQWVTNPPEPPGIWRDLLNSLRDTMFPNPTKLFSPKRNTGIALLGSLLQAFFPILSWGRRYSLSMFKHDIFAGLTLASLCIPQSIGYANLAKLDPQYGLYTSIVPPLVYAVLGTSREIAIGPVAIVSLLLPSLIGKIQDPAADPLAYRNLIFTTTFFAGIFQAAFGFLRLGFLVDFLSHAAIVGFMGGAAIVIGLQQLKGLLGLTHFTNKTDIISVMEAVLGSFRHENTRWNPLNFIIGCSFLSFILITRLLGKKNKKLFWLAVIAPLLSVILSTLLVFLTRADQHGVKIVKRVPAGLNPISACHLQFHSPQISQIATAALIVAVIALTEAIAVGRSFASMKGYTIDGNREMVALGCMNLAGSLTSCYTATGSFSRTAVNFTAGCQTAVSNIVMAVTVMISLEVLTKLLYFTPNAILASIILSALPGLIDFHQAYNVWKIDKLDFFACLGAFLGVLFLSVEFGLLLSIVISFAKIILISIKPGTEILGKLPGTDTFGDIHQYPMALNTPGVLILRVKSSLLCFANANFIKDRILRMISSEEDTSGKRAIQFLVIDLSNLMNIDTSGIGSLEELQNGLGGSGVELAIANPKWEVIHKLRVANFVGKLKGTVFLSVGEAVDACVAAKLGAMV 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3543086 3547717 - CmaCh16G006810.1 Cma16g00681 311279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00681 664 TIGRFAM sulP: sulfate permease 87 642 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma16g00681 664 PANTHER SULFATE TRANSPORTER 32 660 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma16g00681 664 ProSiteProfiles STAS domain profile. 555 655 IPR002645 -
Cma16g00681 664 ProSitePatterns SLC26A transporters signature. 129 150 IPR018045 GO:0008271|GO:0008272
Cma16g00681 664 PANTHER SULFATE TRANSPORTER 2.2 32 660 IPR030315 GO:0008272|GO:0015116
Cma16g00681 664 Pfam Sulfate permease family 100 483 IPR011547 GO:0016021
Cma16g00681 664 Pfam STAS domain 536 651 IPR002645 -
Cma16g00681 664 CDD STAS_SulP_like_sulfate_transporter 536 640 - -
Cma16g00681 664 SUPERFAMILY SpoIIaa-like 542 655 IPR036513 -
Cma16g00681 664 Gene3D STAS domain 515 658 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00681 Cma-Chr16:3543086 Cma15g00724 Cma-Chr15:3515599 0 dispersed
Cma16g00681 Cma-Chr16:3543086 Cma04g02315 Cma-Chr4:16105844 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00681 K17469 - csv:101213063 1000.35