Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00693 ATGATGGTGGAATTCCATGGAGAAATCCGATGCTCTGGCGATGGAGACGAGCAAGACAAGGAAGAGGAACTTAGCTACGATGATCTCAAGAAACGGATGTGGAAAGATAGACAGAGGATGAAGCAGCTGAAGGAGAAGTGGGATACTGAAAAACCTGAATCCGCCGCCAGAGAAGAAGCCTCTCGCCGGAAAAAAATGGCCAGAGCTCAAGATTCGATCCTTAAGTACATGGATAAGATAATGGACGCTTGCAAGGCAAAAGGGTTTGTTTATGGGATCGTTCCGGAGAAGGGGAAACCAGTCACCGGCTCCTCGGAGAGCCTCCGTGAGTGGTGGCGGGACGACGTCCGGTTCGAACAAGATGCTCCCTTAGCCATAGCTCAATTCCTCCCGAAAGTTCTCGAAGAAACAGGGCTCGATTCGGAGTCGTTTTTGCACATGCTCCATGATTTACAGGACACAACATTGGGGTCGATTCTCTCTGCTTTGATTCAACACTGTATTCCGCCACAGAGGAAATTCCCACTTGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGGAATGAGCTTTGGTGGGGTGAACAGGGCGCCGCTGGTGGACATGGCGTACCGCCGTATAAAAAGCCTCACGATCTCAAAAAGGCATGGAAAATTAGTGTCCTGGCAGCGGTGATCAAACATATGTCCCCTGATTTGGACAATATGAGAAAATTGGTTCGGCAATCGAAGAATTTACAAGCGAAAATGACGGCGAAAGAGACGCTTACTTGGGCTAAGGTCGTGAATCAAGAAGAATCCCTCTTGCAGCTAACGAAAAAAAGCCTCAAAATCACCTCCGACGAAGACGAACATGGCGAAAACAGAGAAGAACAGTACGCCGGTGGGATTATTTCGAAACGTAAGTGTATATTCGAACAAGTTGCTGCAGCCGCAGCCGATTCAGCGCTGTACGCTTGTCAGAACCAACGTTGCCCACAGAGCGAGGCGACGATGGGATTCACCGACAAGAAAGCAAGAACAGAGAATGAGACGCAGTGCATTTACAGAGAAGCAGAGGATCAGTCCATCGACACACATTTGAAGAGCGTTGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCCGAGCCAAGCAGCGACGAGGGGAGGAGCGAAGACGCCGTAGATGGGTCCGGCAGCAGCACGGTGGAGAATTACGGGAGCAGTTACTGGAAGGGCGGCGTGGGCGAGGCGTCGGTGGATGAGGCGTTTGAGATGCATAGAGAGAGTATGGATTTGAATGCGAGTCCGGCGAAGGTTTTGGGTGGTGGGCAAGAAGATGCGACTTCCGTTTGGGATTTGATATATGAATGGGCTGAAGACTAA 1365 51.06 MMVEFHGEIRCSGDGDEQDKEEELSYDDLKKRMWKDRQRMKQLKEKWDTEKPESAAREEASRRKKMARAQDSILKYMDKIMDACKAKGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPLAIAQFLPKVLEETGLDSESFLHMLHDLQDTTLGSILSALIQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEESLLQLTKKSLKITSDEDEHGENREEQYAGGIISKRKCIFEQVAAAAADSALYACQNQRCPQSEATMGFTDKKARTENETQCIYREAEDQSIDTHLKSVVEWMNWELSRAEPSSDEGRSEDAVDGSGSSTVENYGSSYWKGGVGEASVDEAFEMHRESMDLNASPAKVLGGGQEDATSVWDLIYEWAED 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3614514 3615878 + CmaCh16G006930.1 Cma16g00693 311291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00693 454 MobiDBLite consensus disorder prediction 1 24 - -
Cma16g00693 454 MobiDBLite consensus disorder prediction 41 64 - -
Cma16g00693 454 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
Cma16g00693 454 SUPERFAMILY DNA-binding domain of EIN3-like 145 268 IPR023278 GO:0003700|GO:0005634
Cma16g00693 454 Gene3D - 138 276 IPR023278 GO:0003700|GO:0005634
Cma16g00693 454 Gene3D - 55 135 IPR023278 GO:0003700|GO:0005634
Cma16g00693 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 16 450 - -
Cma16g00693 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 450 IPR006957 GO:0005634
Cma16g00693 454 Coils Coil 26 46 - -
Cma16g00693 454 MobiDBLite consensus disorder prediction 1 17 - -
Cma16g00693 454 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00834 Cma-Chr11:4196599 Cma16g00693 Cma-Chr16:3614514 3.30E-98 dispersed
Cma15g00551 Cma-Chr15:2568863 Cma16g00693 Cma-Chr16:3614514 4.83E-102 dispersed
Cma16g00693 Cma-Chr16:3614514 Cma04g00807 Cma-Chr4:4140179 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36567 PF04873 EIN3 1.20E-108 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00693 K14514 - csv:116406095 695.271