Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00695 ATGACCGACAACGAGTCTGCAGCGAAGACCTTCCGAGCTCTGGTGGAGAGCGCCAACCGGAAGTTCGCTAGGGTCCAAGACGTCCCGGCCTACGGGCGTATGGACAGCAACCACTACTTTCATAAGGTTTTCAAGGCTTATATGCGTCTCTGGAAGCACCAGCAGGAATACCGTGCTAAGCTTGTTGAATCTGGTCTCAACCGCTGGGAAATTGGCGAGATCGCTAGCCGGATCGGTCAGCTTTACTTTGGGCATTATATGAGAACCAGTGAGGCCAGGTTTTTGATTGAAGCCTATATCTTCTATGAAGCGATTCTTAATCGAAGCTATTTTGAGGGATCGAAGAATTCGAGAAAGGATCTGGGAGCGAGGTTCAAGGAACTGAGGTTTTACGCGAGGTTTTTGATGGTTTCGTTGTTTTTGAATCGTACGGACACAGTTCAGGTTCTTGCGGAACGATTGAAGGCTCTGGTGGACGATAGCAAGGCCGCTTTCCGGGCTACTGACTTTAAGGAATGGAGGCTAGTTGTACAAGAAATTTTCTGCTTCATGAATGTTGCAACCGCCTCGATGAATGTCAGACCTTTGCGTTACTCTACTGCATTTGATTCCCATCTGTCGTCCCTTCCGTTTGTAGCACGTTTCCATGCCAAGAGGGTTCTTAAATTCCGAGATGCCGTTCTGACTAGCTACCACAGAAATGAGGTTAAATTTGCAGAAATTACTTTGGACACTTATAGAATGCTGCAATGTCTAGAATGGGAGCCTGGTTTCTTCTACCAAAAGCATCCAGTTGAACCCAATGAAAATGGAGCTGCCATTGATTATTCTGGGGCGTCTGGAATAATTGATATTAACTTATCTACTGATATTACTGATCCATCTTTACCTCCAAATCCAAAGAAAGCTATCCTCTATCGACCATCTGTGACGCATTTGATAGCTGTCATGGCCACAATTTGTGAGGAGCTCCTTCCAGATAGTATCATGCTGATTTATCTATCTGCAGCAGGGAAATGCTGTCAAAACAGTGTCCATCAAACAGCAAGCTATGGGGGGGAATCAAGAAAATCCTTGAAAAGTAAGGTCATCGCTCAAAATTCACGAGAAAATTGTAATGCTCTACCCGAATCCTGTAAGAGTCAGAAGCCAGGATCGAGTGACCTTTATGATGAGTATTTGTGGTTTGGGCATAGGGGTAATGGAGGTCCAAACGTTTTATACCCTGGTGATATAATACCTTTTACACGTAGACCTGTTTTCTTGATAGTCGACAGTAACAACAGCCATGCATTCAAGGCAGAGAGAGGAGAGACTGCCGCCATACTTCTTTCACCATTGAGGCCTGCATTCAAGAATCCCTTAAATGTTGATACAATTCAATCAGGAAGTCAGTTTACTTTTTTCTTGACTGCCCCTCTGCCTGCATTTTGCGAAATGGTTGGCCTGTCCTCAGCCAATTTGGATATAGATGTTTACAATGATGCTGAGACCATCATCTCCTCCGCATTTTCCGAGTGGGAAATAATTCTTTGTACATCAACTAGCTTAAATATCGTTTGGGCTCAAGTTTTGTCTGATCATTTTTTACGCCGTCTCATTCTCAGATTTATATTCTGCCGATCCGTGCTATCATTCTTCAATACTAAAGAAGACGACGACCTTCCTATTTGTCTGCCTTGTCTTCCCGACGCTATCTCTTCGAATTGTGGAGTCGTCATCTCAGCAATTCGTCGTCTAGCAAATCATCTTAATGTTGCTGACTTATTTAACTTCCACGAAGCAGGGAGTAAGGGATCCGCCCGAGAGAGAAGAAAAAACCCGAAGAAGCGAAATCAGATGGCCCGTACCAAGCAAACCGCCCGTAAATCTACTGGAGGAAAGGCTCCCAGGAAGCAGCTTGCCACTAAGGCTGCTCGTAAGTCCGCGCCAACCACAGGAGGGGTGAAGAAACCCCACAGATACCGTCCTGGTACAGTTGCTCTTCGTGAAATTCGTAAGTATCAGAAGAGTACTGAGCTTTTGATTAGGAAGTTGCCTTTCCAGAGGTTGGTTCGTGAAATTGCCCAGGACTTTAAGACTGATCTGCGTTTCCAGAGCCACGCTGTTCTGGCTTTGCAAGAGGCAGCAGAGGCATACCTTGTTGGGTTGTTCGAGGACACCAATCTCTGTGCGATTCATGCCAAGCGTGTTACCATAATGCCCAAGGATATCCAGTTGGCTCGGAGAATCCGGGGCGAACGAGATTTGATCTGCTGA 2259 45.64 MTDNESAAKTFRALVESANRKFARVQDVPAYGRMDSNHYFHKVFKAYMRLWKHQQEYRAKLVESGLNRWEIGEIASRIGQLYFGHYMRTSEARFLIEAYIFYEAILNRSYFEGSKNSRKDLGARFKELRFYARFLMVSLFLNRTDTVQVLAERLKALVDDSKAAFRATDFKEWRLVVQEIFCFMNVATASMNVRPLRYSTAFDSHLSSLPFVARFHAKRVLKFRDAVLTSYHRNEVKFAEITLDTYRMLQCLEWEPGFFYQKHPVEPNENGAAIDYSGASGIIDINLSTDITDPSLPPNPKKAILYRPSVTHLIAVMATICEELLPDSIMLIYLSAAGKCCQNSVHQTASYGGESRKSLKSKVIAQNSRENCNALPESCKSQKPGSSDLYDEYLWFGHRGNGGPNVLYPGDIIPFTRRPVFLIVDSNNSHAFKAERGETAAILLSPLRPAFKNPLNVDTIQSGSQFTFFLTAPLPAFCEMVGLSSANLDIDVYNDAETIISSAFSEWEIILCTSTSLNIVWAQVLSDHFLRRLILRFIFCRSVLSFFNTKEDDDLPICLPCLPDAISSNCGVVISAIRRLANHLNVADLFNFHEAGSKGSARERRKNPKKRNQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERDLIC 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3626141 3634785 + CmaCh16G006950.1 Cma16g00695 311293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00695 752 PANTHER PROTEIN SCAI 7 594 - -
Cma16g00695 752 SMART h35 647 749 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 ProSitePatterns Histone H3 signature 2. 680 688 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 Gene3D Histone, subunit A 615 749 IPR009072 GO:0046982
Cma16g00695 752 SUPERFAMILY Histone-fold 615 747 IPR009072 GO:0046982
Cma16g00695 752 Pfam Protein SCAI 14 548 IPR022709 GO:0003714|GO:0006351
Cma16g00695 752 ProSitePatterns Histone H3 signature 1. 628 634 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 MobiDBLite consensus disorder prediction 597 654 - -
Cma16g00695 752 PRINTS Histone H3 signature 671 688 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 PRINTS Histone H3 signature 693 711 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 PRINTS Histone H3 signature 630 644 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 PRINTS Histone H3 signature 647 668 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 PRINTS Histone H3 signature 711 727 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 PRINTS Histone H3 signature 616 630 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 PRINTS Histone H3 signature 727 748 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cma16g00695 752 Pfam Core histone H2A/H2B/H3/H4 614 745 IPR007125 GO:0003677
Cma16g00695 752 MobiDBLite consensus disorder prediction 603 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00695 - - - cmax:111483509 1180.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01012 Cma-Chr8:6344879 Cma16g00695 Cma-Chr16:3626141 8.44E-166 dispersed
Cma16g00695 Cma-Chr16:3626141 Cma17g00070 Cma-Chr17:332351 0 dispersed
Cma08g00119 Cma-Chr8:620971 Cma16g00695 Cma-Chr16:3626141 5.21E-28 transposed
Cma16g00695 Cma-Chr16:3626141 Cma04g00812 Cma-Chr4:4154842 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1090 . . . . . . . . . Cmo16g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00695 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004625 2 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00695 Cma_Chr16 FPKM 113.973305 123.616333 74.955963 73.537666 121.868111 128.441772 118.735611 124.583183 116.744873 114.507309