Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00704 ATGAAAATGATGATAGTTAGGATGGGAGTACTCTATCTTACAATTCTAATACTGGCTTGCTTTCATTATCTTGCGCTGTCTGATTTTCAAGGCGATGCACTCTTTGCACTGAGGAATGCATTGAATGCAACTGCAAATCAGCTCGCAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCGAATGTTATATGTAGTGGAAACAATGTGATCTCTGTATCCTTGTCTTCAATGGGATTTACTGGAACCTTGTCTCCGAGAATTGGAGTTCTAAAATCACTTTCAACCCTGATTTTGCAGGGAAATTACATAACTGGAGAGATACCAAAGGATTTTGGAAACCTGACAAATTTGGTTAGTATGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCGTCGTCCCTGGGTAATCTTAAGAAACTACAGTTCCTAACTCTTAGTCATAATCGTCTAACGGGGACTATTCCAGAGTCACTTTCAAACATTGATAGCTTGATCAATCTTCTGCTGGATTCGAATGAACTCAGTGGCTCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGGAAACAAGTTAAATTGTGGCGGGAAATCCCTTCATGCCTGTGCTTCAGATGGTACAAACTCAGGTTCTTCCAATAAACCCAAGGTTGGCCTTATAGTTGGAATAATTGCTGGGTTCACCGTTGCTCTTCTTTTGGTCGGTGTGTTGTTTTTCTTGTCTAAGGGTAGATATAAAAGCTACAAGCGTGAAGTGTATGTAGATGTTCCAGGTGAAGATGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCTACAGAAAACTTCAGTGAAAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTATAAAGGGGTGCTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTAACTGATTATGAAAGTCCAGCGGGTGACGCTGCTTTTCAACGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAAAAATCTGTTGCGTCTCATTGGGTTTTGTACAACTCAGACAGAACGCCTATTGGTATATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCAGGGGAGCCTGTTTTAGATTGGCCTACTCGAAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAATCCAAAGATCATTCATCGAGATGTTAAGGCAGCTAATGTACTGCTTGATGAAGATTTTGAAGCAGTTGTGGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAGTTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCCACCGGAAAATCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTCGTTACGGGGCAACGTGCAATCGACTTCTCGCGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTCGATGCCATTGTCGATCGAAATCTAAAGAACTACAACATTCAAGAGGTGGAGATGATGATTAAAGTTGCATTGCTGTGCACACAGCCACTATCAGATGACCGCCCCGCAATGTCGCAAGTCGTTCGGATGCTGGAAGGAGAGGGATTGGCAGAGAAGTGGGAAGAATGGCAGCATTTGGAGGTGAGTCGCAGACAAGAGTATGAGAGACTGCAGAGAAGATTTGAATGGGGTGAAGATTCTATACATAGACAGGATGCAATCCAGTTGTCTGGTGGAAGATGA 1839 42.52 MKMMIVRMGVLYLTILILACFHYLALSDFQGDALFALRNALNATANQLADWNPNQVNPCTWSNVICSGNNVISVSLSSMGFTGTLSPRIGVLKSLSTLILQGNYITGEIPKDFGNLTNLVSMDLGNNSLTGQIPSSLGNLKKLQFLTLSHNRLTGTIPESLSNIDSLINLLLDSNELSGSIPQQLFQVPKFNFSGNKLNCGGKSLHACASDGTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVYVDVPGEDDRRIAFGQLKRFAWRELQLATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPAGDAAFQREVEMISVAVHKNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKNYNIQEVEMMIKVALLCTQPLSDDRPAMSQVVRMLEGEGLAEKWEEWQHLEVSRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3666493 3672142 - CmaCh16G007040.1 Cma16g00704 311302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00704 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Cma16g00704 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 612 - -
Cma16g00704 612 SUPERFAMILY L domain-like 30 200 - -
Cma16g00704 612 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Cma16g00704 612 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00704 612 Pfam Protein kinase domain 291 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00704 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Cma16g00704 612 SUPERFAMILY Protein kinase-like (PK-like) 271 564 IPR011009 -
Cma16g00704 612 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Cma16g00704 612 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cma16g00704 612 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Cma16g00704 612 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00704 612 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Cma16g00704 612 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Cma16g00704 612 PANTHER LRR RECEPTOR KINASE SERK2 12 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00818 Cma-Chr4:4193486 Cma16g00704 Cma-Chr16:3666493 0 dispersed
Cma16g00704 Cma-Chr16:3666493 Cma04g00792 Cma-Chr4:4036169 0 dispersed
Cma20g01006 Cma-Chr20:6426222 Cma16g00704 Cma-Chr16:3666493 0 transposed
Cma16g00704 Cma-Chr16:3666493 Cma04g00817 Cma-Chr4:4181746 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69196 PF00069 Pkinase 2.90E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00704 - - csv:116403405 1119.38