Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00706 ATGGCAGCTTGTTTTAGTTTCTCATACACCTTGAACTCGTATTTCCGGCGCTCCTTTTCTATGGCAGGCCTCAAATCCATCACCACTGATCTACGCGAAGGAACGATCATCCACTGTTGGGCGCCCAAATTCAGAAGAGATACGAAACCAAATTTGCTTCTTATCCATGGATTTGGAGCCAACGCAATGTGGCAATGGAACAAGTTCATATCGCCAATGATTCGGTTCTTCAATGTCTACGTTCCTGACCTAATTTTCTTCGGCAATTCGTACACAACTCGCCCTGAGAGGACCGAGTCCTTTCAAGCTCTCTGTATGATGCGATTAATGGATTCGCTCGATGTTCAGACGGTGAATGTCGTTGGAATTAGCTACGGTGGCTTCGTAGCATACAGTATGGCGGCTCAATTTCCAGAGCGATTGGAGAAATTGGTGCTCTGTTGTGCCGGCGTTTGCTTGGAAGAGAAAGATATGGCGGACGGGATGTTCGTCGTGAAAAACATCGATGAGGCCGCAGATATTTTACTGCCTCAAACGCCGGCGAGGCTCAAGGAACTCATCCGCCTCACCTTCGTCAAGCCTGCTCGATTTTTGCCTACTTTCATTATCAACGATTTCATCAATGTGATGTGCAAAGAGTACCAGCAAGAGAAAGAAGAGTTGATCAAACAATTACTCAAGGATCGGACCTTATCTAATCTTCCCAAGATCGATAAGACTACATTGATATTATGGGGAGACCAAGACCAAGTATTTCCTTTGGAGTTAGCCAATAGATTAAAAAGGCACGTGGGTGAAAAGGCTGAATTAGTGGTTATAAAGAAAGCAGGGCATGCGTTCATTGCAGAGAAGCCAAGAAAAATGTACAAACACATCAAGGCTTTTCTCACCACCAACCCCACCCTTTCCCCTTCAACAAACCCACCTTTTTGTAGCGTTTTATTGCTTGCAAATCAATCT 960 44.9 MAACFSFSYTLNSYFRRSFSMAGLKSITTDLREGTIIHCWAPKFRRDTKPNLLLIHGFGANAMWQWNKFISPMIRFFNVYVPDLIFFGNSYTTRPERTESFQALCMMRLMDSLDVQTVNVVGISYGGFVAYSMAAQFPERLEKLVLCCAGVCLEEKDMADGMFVVKNIDEAADILLPQTPARLKELIRLTFVKPARFLPTFIINDFINVMCKEYQQEKEELIKQLLKDRTLSNLPKIDKTTLILWGDQDQVFPLELANRLKRHVGEKAELVVIKKAGHAFIAEKPRKMYKHIKAFLTTNPTLSPSTNPPFCSVLLLANQS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3677599 3679790 + CmaCh16G007060.1 Cma16g00706 311304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00706 320 Pfam alpha/beta hydrolase fold 50 152 IPR000073 -
Cma16g00706 320 Gene3D alpha/beta hydrolase 8 299 IPR029058 -
Cma16g00706 320 Coils Coil 204 224 - -
Cma16g00706 320 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Cma16g00706 320 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Cma16g00706 320 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Cma16g00706 320 PRINTS Alpha/beta hydrolase fold signature 241 255 IPR000073 -
Cma16g00706 320 PANTHER SI:DKEY-122A22.2 3 305 - -
Cma16g00706 320 SUPERFAMILY alpha/beta-Hydrolases 22 296 IPR029058 -
Cma16g00706 320 Pfam TAP-like protein 236 298 IPR013595 -
Cma16g00706 320 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 3 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00706 - - - cmax:111483219 644.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00500 Cma-Chr5:2371591 Cma16g00706 Cma-Chr16:3677599 7.42E-120 dispersed
Cma16g00623 Cma-Chr16:3208948 Cma16g00706 Cma-Chr16:3677599 3.04E-35 dispersed
Cma16g00706 Cma-Chr16:3677599 Cma16g00609 Cma-Chr16:3163212 3.31E-09 dispersed
Cma05g00410 Cma-Chr5:1804922 Cma16g00706 Cma-Chr16:3677599 1.48E-73 transposed
Cma14g01235 Cma-Chr14:9784443 Cma16g00706 Cma-Chr16:3677599 1.06E-08 transposed
Cma16g00706 Cma-Chr16:3677599 Cma04g00820 Cma-Chr4:4203961 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002597 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 2 2 0 3 2 2 2 2 1 2 2 2 4 2 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00706 Cma_Chr16 FPKM 0.0 0.0 0.245781 0.0 1.023106 1.782458 0.888816 0.0 0.0 0.113753