Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00736 ATGAAGCTTCTTCTGCTCCTCTTTCTCCTTCTTCACCTTCATACCCATCTCTCCGTTTCTTCTCACTTGCCTGAATTTCGTGCTCTTCTCTCTCTCAAAACCTCCCTCTCCGATGACTCTCACTCGCCGCTTTCTAACTGGGATGCTGCTACTCCCCACTGTACTTGGACTGGAGTCGCCTGCGATTTCCGCCGCCACGTTGTCGGCCTTGACCTTGCCGGATTGAATCTCTCCGGCACTCTTTCTCCTGACCTGGGTAGTCTTCGGTTTCTCGCGAATCTCTCTCTTGCTGCTAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCTATCTCTCCGCTTAAATACCTTAACCTCTCTAACAATCTGATTAATGGAACCTTCCCTTTGCAACTCTCCTTGCTTAAGAATCTGGAGTTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATTGAGTTGCCGAATCTTCGCCATTTGCATCTCGGTGGGAACTTCTTCTCCGGCGTGATTCCGCCGGAGTATGGAACCTGGCAGTTCATGGAGTACTTGGCTGTTTCTGGAAATGAGCTTCAAGGCCCGATTCCGCCGGAGATTGGTAATTTAACGAGGCTTCGTGAACTTTATATTGGGTATTACAATACCTACGATGGCGGTTTGCCGCCGGAGATCGGAAACTTATCGGAGCTGGTTCGATTGGATGCGGCAAACTGTGGGTTAATGGGTGAGATTCCTCGCGAACTTGGAAAACTTCAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAGCTCGGGAGCTTAACCGGGTTGAAATCCATGGATTTGTCGAACAACATTCTTGTTGGGGAGATTCCGGACTCGTTCTCTCAACTCAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCTCAGTTCATCGGTGAGTTAACGGAGCTGGAAGTGCTGCAGTTGTGGGAAAATAACTTCACCGGCTCTATTCCTTATAATTTGGGGAAGAACGGCAAGCTTGTTGTTCTTGACATTTCGTCGAACAAGTTGACTGGAACTTTACCTCCCGATATGTGCCATGGAAACCGGCTTCAAACTCTGATTACCCTCGGGAATTTCTTGTTCGGTCCAATCCCTGAATCTCTCGGTCGATGCGAATCATTGAGCCGTATTCGAATGGGGGAAAATTTTCTCAATGGTTCGATTCCAAAGGGTCTGTTCAGTTTGCCAAATCTTTCCCAAGTTGAGTTGCAGAACAATTTCCTCACCGGAGAGTTTCCGGTCACGGATTTCGTCTCTGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGCCTCTCGGGATCCCTTCCACCGATGGTTGGAAATTTCTCCGGTGTCCAGAAGCTTCTTCTTGATGGGAATAAATTATCCGGCCAAATCCCACCTGAAATCGGACGATTACAGCAGTTATCAAAGATCGATTTCAGCCACAACAAATTCTCCGGCCAAATCGCCCCTGAAATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGCAACGAACTCTCCGGTGAGATTCCGAATGAAATCACCACAATGAGAATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCCGTTGATTTTTCATATAACAATCTCTCCGGTTTAGTTCCGGGCACCGGCCAGTTTAGCTACTTCAACTACACCTCATTCCTAGGCAACCCAGATCTCTGCGGTCCATACTTAGGACCTTGCAGAAATGGCGTCGACAATGGTACTCACACCCCTCATTTAAAACCCTCGCTCTCTGCCTCTGTTAAGCTTCTGCTCGTCATCGTCTTACTCGTCTGCTCCATCGCCTTCGCAATCGCTGCAATCATCAAAGCTAGATCGCTAAAACGAGCGAGCGGCTCTCGCGCTTGGAAACTAACCGCATTCCAAAGACTAGATTTCACAGTCGATGACATTTTGAACTCCTTGAAAGAAGACAACATAATCGGAAAAGGAGGCGCAGGGATTGTTTACAAAGGTTTTATGCCGAGCGGTGATCATGTCGCCGTGAAAAGGCTTCCGGCAATGAGCCGAGGGTCGTCCCATGATCATGGATTCAACGCTGAGATACAGACTCTGGGGAGAATTAAACATCGCCACATCGTTAGATTATTGGGTTTCTGTTCAAATCACGAAACCAATCTTCTGGTTTATGAATACATGCCCAATGGGAGTTTAGGGGAAGTTCTTCACGGGAAGAAGGGCGGCCATTTGCAGTGGGACACAAGGTATAAAATCGCCATTGAAGCTGCTAAAGGTCTATGCTATTTACATCATGACTGTTCGCCATTGATTGTTCATCGAGATGTGAAATCAAACAATATTCTTCTGGATTCTGATTACGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCGGGTACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCTTATACACTACGAGTGGACGAGAAGAGCGATGTTTATAGCTTTGGAGTAGTACTTTTAGAATTGGTGAGCGGGCGAAAGCCCGTCGGGGAATTCGGGGACGGGGTTGACATAGTTCAATGGGTTAGAAAAATGACGATCCCCAGCAATGAAGGGGTGGTGAAAATCATCGATCCACGGCTGTCGTCGGTGCCACTGAATGAAGTGAGTCATATGTTCTATGTAGCAATGCTGTGTGTGGAAGAGCAGGCGGTGGAGAGGCCAACAATGAGAGAAGTAGTTCAAATCCTGACAGAGCTTTCGAGGCCACCAAGCTCTAAAGAAGCCGAAGCAACATCGGCATTGTCACCACCGGGAACAACGGTGGCGTTGGATTCACCAAAGAAAACAACACAGCCACCGCCTGATCTTCTGAGCATTTGA 3012 47.11 MKLLLLLFLLLHLHTHLSVSSHLPEFRALLSLKTSLSDDSHSPLSNWDAATPHCTWTGVACDFRRHVVGLDLAGLNLSGTLSPDLGSLRFLANLSLAANQISGPIPPEISAISPLKYLNLSNNLINGTFPLQLSLLKNLEFLDLYNNNMSGNLPLVVIELPNLRHLHLGGNFFSGVIPPEYGTWQFMEYLAVSGNELQGPIPPEIGNLTRLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLMGEIPRELGKLQKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPDSFSQLKNLTLLHLFRNKLHGAIPQFIGELTELEVLQLWENNFTGSIPYNLGKNGKLVVLDISSNKLTGTLPPDMCHGNRLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPKGLFSLPNLSQVELQNNFLTGEFPVTDFVSANLGQISLSNNRLSGSLPPMVGNFSGVQKLLLDGNKLSGQIPPEIGRLQQLSKIDFSHNKFSGQIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCRNGVDNGTHTPHLKPSLSASVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTVDDILNSLKEDNIIGKGGAGIVYKGFMPSGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTIPSNEGVVKIIDPRLSSVPLNEVSHMFYVAMLCVEEQAVERPTMREVVQILTELSRPPSSKEAEATSALSPPGTTVALDSPKKTTQPPPDLLSI 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3881525 3885008 - CmaCh16G007360.1 Cma16g00736 311334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00736 1003 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Cma16g00736 1003 MobiDBLite consensus disorder prediction 963 1003 - -
Cma16g00736 1003 SUPERFAMILY RNI-like 70 390 - -
Cma16g00736 1003 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Cma16g00736 1003 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00736 1003 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00736 1003 Gene3D Phosphorylase Kinase; domain 1 656 766 - -
Cma16g00736 1003 SUPERFAMILY L domain-like 298 615 - -
Cma16g00736 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 994 - -
Cma16g00736 1003 SMART serkin_6 689 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00736 1003 Gene3D Transferase(Phosphotransferase) domain 1 767 978 - -
Cma16g00736 1003 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 994 - -
Cma16g00736 1003 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Cma16g00736 1003 Gene3D Ribonuclease Inhibitor 236 349 IPR032675 -
Cma16g00736 1003 Gene3D Ribonuclease Inhibitor 178 233 IPR032675 -
Cma16g00736 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cma16g00736 1003 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515
Cma16g00736 1003 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515
Cma16g00736 1003 Gene3D Ribonuclease Inhibitor 353 618 IPR032675 -
Cma16g00736 1003 SMART LRR_typ_2 569 592 IPR003591 -
Cma16g00736 1003 SMART LRR_typ_2 329 353 IPR003591 -
Cma16g00736 1003 SMART LRR_typ_2 160 184 IPR003591 -
Cma16g00736 1003 SMART LRR_typ_2 497 521 IPR003591 -
Cma16g00736 1003 SMART LRR_typ_2 354 377 IPR003591 -
Cma16g00736 1003 SMART LRR_typ_2 281 305 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01701 Cma-Chr1:11576522 Cma16g00736 Cma-Chr16:3881525 5.75E-167 dispersed
Cma03g00085 Cma-Chr3:854555 Cma16g00736 Cma-Chr16:3881525 4.65E-131 dispersed
Cma03g00869 Cma-Chr3:6441830 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma07g00607 Cma-Chr7:2629596 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma07g00610 Cma-Chr7:2635527 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma07g01299 Cma-Chr7:7366377 Cma16g00736 Cma-Chr16:3881525 8.44E-145 dispersed
Cma09g00096 Cma-Chr9:426714 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma16g00736 Cma-Chr16:3881525 Cma16g00776 Cma-Chr16:4268101 0 dispersed
Cma16g00736 Cma-Chr16:3881525 Cma04g00853 Cma-Chr4:4374906 1.41E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69197 PF00069 Pkinase 4.00E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00736 - - cit:102608073 1595.87