Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00739 ATGGCTGGGGGAGGAATGATCCGGCAGTTGCTGAGGAAATTTCCATCTCAATCTTCAACCCCTCCATTGACCTCATCCCTTATTTCAAAGAATGAGGAAGCTGGCTTTGCTGGGATGAACTCTTTTAGAAGGCTTGCTCTCCTTGGAGCAGGCATTTCTGGGTTTTTCAGTTTCGCAACTATAGCATCTGCTGATGAGGCAGAACATGGCTTGGAGTGCCCAAACTATCCCTGGCCTCACCAGGGCATCTTGAGTTCATATGATCATGCTTCGATTCGTCGTGGCCATCAGGTTTACCAACAAGTTTGTGCATCCTGTCATTCCATGTCTTTAATATCATACCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACAAAAGCAATGGCTGCTGAAATTGAGGTAGTTGATGGGCCCAATGATGAAGGTGAGATGTTCACTCGTCCAGGTAAACTCAGTGACCGGTTTCCTGAACCATATGCAAATGAACAAGCTGCTAGATTCGCTAATGGTGGGGCATACCCTCCAGATCTGAGCCTTATCACAAAAGCTCGTCATAATGGTCAGAATTATGTATTTTCCCTTCTTACTGGTTATCGTGATCCTCCTGCTGGCGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGGGGAGCAATTGCGATGCCTAAGATGCTTAATGATGGAGCTGTTGAGTACGAAGATGGTACCCCAGCGACAGAAGCACAGATGGGTAAAGATGTTGTCTCGTTCTTGTCATGGGCTGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTTGTGCTCTCTCTGGCTCTACTTCAGGCCGCATATTATCGCCGATTGAAATGGTCAGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTGGTCAATTAG 924 46.43 MAGGGMIRQLLRKFPSQSSTPPLTSSLISKNEEAGFAGMNSFRRLALLGAGISGFFSFATIASADEAEHGLECPNYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3918946 3925265 - CmaCh16G007390.1 Cma16g00739 311337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00739 307 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 25 307 - -
Cma16g00739 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PANTHER CYTOCHROME C1 25 307 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Cma16g00739 307 Gene3D - 263 306 - -
Cma16g00739 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
Cma16g00739 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Cma16g00739 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00810 Cma-Chr4:4147614 Cma16g00739 Cma-Chr16:3918946 2.58E-12 transposed
Cma16g00739 Cma-Chr16:3918946 Cma04g00859 Cma-Chr4:4401748 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00739 K00413 - csv:101215010 603.594