Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00743 ATGGCGCCGCCGCCGCCCACCAACTGGCTTTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCTACTGACTCTCCGTTTCTTCCTTATGAGCCACCCTCCACTGCCTCTCCGCACTATCTTTTGGACACTTTCTACTCCAACAATGTTTCTGGGAAGAAGTCAAATTCTTACGAGTTTCGATGTTTTTTGTTTTGTTACTTTGTTCAAGGATGGAGTGGCAGTGCTAATTCTCATCATAGTCATGAACCCAAGCTTGAGGATTTCCTCGGCGATTCATCGCCGATGATGCGATATTCCGACAGCCAAACAGAGACACAAGATTCGTCTTTGACTCATATTTACGACCATGCCTATTTTGGGGACCAACAGGATTTCAAAACCATTGCGGCGTTTCAAGCTTTTTCCGGTAACTCTGGTTCAGAAGTAGATGACTCTGTTTCCATTACCAGAACCCAGATCGCCGCTGCTGAGACCCCCACTGGTGCTCTGTCTCTTTCTGTCGTGCAGAGCTCCGACACGGCGTCGGCTGTTGTCGCTGTCGATTCTGATTCCTCCAAGAAAATCGCCGATACGTTTGGCCAACGAACTTCGATTTATAGAGGAGTCACTAGACATAGATGGACGGGGAGATATGAAGCGCATCTATGGGACAATAGCTGTAGAAGAGAGGGTCAAGCTAGGAAAGGACGGCAAGGTGGATATGATAAGGAGGACAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCCACTGCTACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGACGAGATGAAACATGTCACGAAGCAAGAGTTTATCGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGAGGGGTGCGTCGATTTATAGAGGTGTAACTAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGCCGTGTTGCTGGGAACAAGGACCTGTATCTCGGGACGTTTGCTACGGAAGAGGAAGCAGCTGAGGCTTACGACATAGCAGCGATCAAGTTCAGGGGTTTGAACGCTGTGACGAACTTCGAGATGAGTCGTTACGACGTGGAAGCTATTGCGAAAAGTGCGTTGCCAATCGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTGGAAACCGAGCAGAAGCCAATTCTGAATCATGATCAAGCCATCCAGTGCAGCAATGGAAACAACAATATGAACTTAGGCACTGCCATCCAAGCTGTGCCTGTGCCATCGATCCCGTGCGGAATTCCATACGATACCGCAGCTATGCTGTATCACCATAATTACTATCATCTTCAGCCTAACGCGATCGGTTCCTCGGAGTCGACCAGCCCATCCATTGCAGCTCCGGTGAGTTTGGGACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1431 49.27 MAPPPPTNWLSFSLSPIEMLRSTDSPFLPYEPPSTASPHYLLDTFYSNNVSGKKSNSYEFRCFLFCYFVQGWSGSANSHHSHEPKLEDFLGDSSPMMRYSDSQTETQDSSLTHIYDHAYFGDQQDFKTIAAFQAFSGNSGSEVDDSVSITRTQIAAAETPTGALSLSVVQSSDTASAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELDEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLETEQKPILNHDQAIQCSNGNNNMNLGTAIQAVPVPSIPCGIPYDTAAMLYHHNYYHLQPNAIGSSESTSPSIAAPVSLGPQAAEFFVWPHQSY 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3982680 3986349 + CmaCh16G007430.1 Cma16g00743 311341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00743 476 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 PRINTS Ethylene responsive element binding protein signature 338 358 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 ProSiteProfiles AP2/ERF domain profile. 199 262 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 SUPERFAMILY DNA-binding domain 198 264 IPR016177 GO:0003677
Cma16g00743 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 7 471 - -
Cma16g00743 476 ProSiteProfiles AP2/ERF domain profile. 298 356 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 SMART rav1_2 298 362 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 SMART rav1_2 199 268 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 CDD AP2 297 358 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 Pfam AP2 domain 298 348 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 Pfam AP2 domain 199 254 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 Gene3D AP2/ERF domain 199 264 IPR036955 GO:0003700|GO:0006355
Cma16g00743 476 Gene3D AP2/ERF domain 298 358 IPR036955 GO:0003700|GO:0006355
Cma16g00743 476 CDD AP2 198 264 IPR001471 GO:0003700|GO:0006355
Cma16g00743 476 SUPERFAMILY DNA-binding domain 297 358 IPR016177 GO:0003677
Cma16g00743 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00743 Cma-Chr16:3982680 Cma20g00072 Cma-Chr20:315450 5.95E-121 dispersed
Cma16g00743 Cma-Chr16:3982680 Cma04g00859 Cma-Chr4:4401748 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36571 PF00847 AP2 1.10E-08 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00743 K09285 - csv:101217714 717.998