Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00743 | ATGGCGCCGCCGCCGCCCACCAACTGGCTTTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCTACTGACTCTCCGTTTCTTCCTTATGAGCCACCCTCCACTGCCTCTCCGCACTATCTTTTGGACACTTTCTACTCCAACAATGTTTCTGGGAAGAAGTCAAATTCTTACGAGTTTCGATGTTTTTTGTTTTGTTACTTTGTTCAAGGATGGAGTGGCAGTGCTAATTCTCATCATAGTCATGAACCCAAGCTTGAGGATTTCCTCGGCGATTCATCGCCGATGATGCGATATTCCGACAGCCAAACAGAGACACAAGATTCGTCTTTGACTCATATTTACGACCATGCCTATTTTGGGGACCAACAGGATTTCAAAACCATTGCGGCGTTTCAAGCTTTTTCCGGTAACTCTGGTTCAGAAGTAGATGACTCTGTTTCCATTACCAGAACCCAGATCGCCGCTGCTGAGACCCCCACTGGTGCTCTGTCTCTTTCTGTCGTGCAGAGCTCCGACACGGCGTCGGCTGTTGTCGCTGTCGATTCTGATTCCTCCAAGAAAATCGCCGATACGTTTGGCCAACGAACTTCGATTTATAGAGGAGTCACTAGACATAGATGGACGGGGAGATATGAAGCGCATCTATGGGACAATAGCTGTAGAAGAGAGGGTCAAGCTAGGAAAGGACGGCAAGGTGGATATGATAAGGAGGACAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCCACTGCTACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGACGAGATGAAACATGTCACGAAGCAAGAGTTTATCGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGAGGGGTGCGTCGATTTATAGAGGTGTAACTAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGCCGTGTTGCTGGGAACAAGGACCTGTATCTCGGGACGTTTGCTACGGAAGAGGAAGCAGCTGAGGCTTACGACATAGCAGCGATCAAGTTCAGGGGTTTGAACGCTGTGACGAACTTCGAGATGAGTCGTTACGACGTGGAAGCTATTGCGAAAAGTGCGTTGCCAATCGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTGGAAACCGAGCAGAAGCCAATTCTGAATCATGATCAAGCCATCCAGTGCAGCAATGGAAACAACAATATGAACTTAGGCACTGCCATCCAAGCTGTGCCTGTGCCATCGATCCCGTGCGGAATTCCATACGATACCGCAGCTATGCTGTATCACCATAATTACTATCATCTTCAGCCTAACGCGATCGGTTCCTCGGAGTCGACCAGCCCATCCATTGCAGCTCCGGTGAGTTTGGGACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG | 1431 | 49.27 | MAPPPPTNWLSFSLSPIEMLRSTDSPFLPYEPPSTASPHYLLDTFYSNNVSGKKSNSYEFRCFLFCYFVQGWSGSANSHHSHEPKLEDFLGDSSPMMRYSDSQTETQDSSLTHIYDHAYFGDQQDFKTIAAFQAFSGNSGSEVDDSVSITRTQIAAAETPTGALSLSVVQSSDTASAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELDEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLETEQKPILNHDQAIQCSNGNNNMNLGTAIQAVPVPSIPCGIPYDTAAMLYHHNYYHLQPNAIGSSESTSPSIAAPVSLGPQAAEFFVWPHQSY | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3982680 | 3986349 | + | CmaCh16G007430.1 | Cma16g00743 | 311341 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00743 | 476 | PRINTS | Ethylene responsive element binding protein signature | 200 | 211 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | PRINTS | Ethylene responsive element binding protein signature | 338 | 358 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 199 | 262 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | SUPERFAMILY | DNA-binding domain | 198 | 264 | IPR016177 | GO:0003677 | |
Cma16g00743 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 | 7 | 471 | - | - | |
Cma16g00743 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 298 | 356 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | SMART | rav1_2 | 298 | 362 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | SMART | rav1_2 | 199 | 268 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | CDD | AP2 | 297 | 358 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | Pfam | AP2 domain | 298 | 348 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | Pfam | AP2 domain | 199 | 254 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | Gene3D | AP2/ERF domain | 199 | 264 | IPR036955 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | Gene3D | AP2/ERF domain | 298 | 358 | IPR036955 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | CDD | AP2 | 198 | 264 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00743 | 476 | SUPERFAMILY | DNA-binding domain | 297 | 358 | IPR016177 | GO:0003677 | |
Cma16g00743 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 7 | 471 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00743 | Cma-Chr16:3982680 | Cma20g00072 | Cma-Chr20:315450 | 5.95E-121 | dispersed | |
Cma16g00743 | Cma-Chr16:3982680 | Cma04g00859 | Cma-Chr4:4401748 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36571 | PF00847 | AP2 | 1.10E-08 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00743 | K09285 | - | csv:101217714 | 717.998 |