Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00747 ATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATCTGGGACCGTGGAAAAACCATTTGCTCGAAGAAAATCTTAAGTTGACCTCTCATAGCAATAACATACGGTTACAGAATGTAGCCAGTCCATCGTCTCTTTTATTTCAGCAGAAGAACACTTGGAGCAGTCATTTATTTAGCTTGAAATACCCACCTAGTTACGTTGTGCCTTCTAGATACAATGCATTCAGGTGCCATTCGTCATTGATGACAAACCAACCACTGGATCCCTCTGGGATGAAGGCTGCTATAGTGGCGTTGACAAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGGTTAAGATGGTTCCTGCAGTTAGTATTATGATATTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACAAGAAGCCTACTCCATAGTGATAGTAACTGGAAGAAAAGCCAGACATATAAAGTCATGAGCTTGTATCTTCAACCCTTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCTAGCCAAGTTGTGAAGCAACGGGTGCTGAATTTTGTTAGGTCATTGTCCACTGTACTGGCCTTTGCGTATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGACTAGTGAATCCAGTGATGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTGTACTCGGCAGTATGGGTTGCTGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTGTTGCTGACATTAGCTGGCCGCGAGATTTTCACCAACTTTCTCTCAAGTGTAATGATTCATGCAACCCGTCCTTTCGTTGTAAATGAGTGGATCCAAACGAAGATCGAGGGCTATGAAGTTTCTGGAACTGTTGAGCATGTAGGGTGGTGGTCGCCAACGATCATCAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTTACCATGAATGTTGTGAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCCATCAGCCATTTGGATGTCAGTAAAATCAATAATATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTTTTTTTGGAAAACGTGAATCCTGAAAATCAGGCCCTTTTGATTTTGATATCTTGCTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTGAAGGAAGCTATATTTTTGGATCTTCTTAGAGTCATTAGACATCACCGAGCTCGACTTGCGACACCAATCCGCACAGTGCAGAAGATGCATAGTGATTCAGACTTGGAAAGCGTTCCATTTTCTGATTCAATATTTGGTCATGGTGGTGCAACTTTGAATCGCCGCATGCTGATGATTGAACCCCCCTACAAAGTTTACGGAGATGATCGAAAGCAAAGCCATAGTAGGACATCACGCACAACTGGAGAACAAAACAGTAAGCCCATTGCACGGTCGTCGGGTGACAACAAGGCAGCTAAAGAGACATCACCATCTGAAAGAAAGATGGAAGTAAAGACTGGAGAAGGACGAGACTCCGATACAAAAATATATTCCAAAGTTCCGATGTCAACCTCTGAAGATAATAAACCAAGCAGTGAATCGAAACATAAATCATCATCAAGGTCTGTGTCGAGTACGAATGGTATCGCTGATATGCCAACTTCTGATGCCAAAACAACTACATTAGATGCTGATAATTCAATGCAAGATTCTGGCTCCTCCAAGAAATCCAAAAATAGCTCAGGGAGTAACAACAAGCAGAACTACAAGCCTATCCATTCTTCTGTTTCCTTTCAGGAAGATGTCAAGAAACCAGAAGGAACTACTTCATCAGCTTCACAGCCAAGGATAGAAGGTGATCAGACGACAAATCCACCAACAACAAAGCCCAGCGTAGAAGAGAATATAATCCTCGGCGTTGCTTTGGATCGCTCTAAGAGAACACTTCCTATCGAGGACGACACGCCATCTTCCCCTCAAACGTCGTTGGGATCAAAAGATTTGGCTGCTGCATCCCTGAATGGGAACGTGGCGAGTGGAGCAACAACTCCCGACAAGGAAACGAAACGGCAGTCTCCTCCTACCACATCTTCTATTGAATAA 2217 43.03 MVLVGSLQLSYHLGPWKNHLLEENLKLTSHSNNIRLQNVASPSSLLFQQKNTWSSHLFSLKYPPSYVVPSRYNAFRCHSSLMTNQPLDPSGMKAAIVALTRFCNVLGGCPPPVVKMVPAVSIMIFAVWGLGPFLRYTRSLLHSDSNWKKSQTYKVMSLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAIFLDLLRVIRHHRARLATPIRTVQKMHSDSDLESVPFSDSIFGHGGATLNRRMLMIEPPYKVYGDDRKQSHSRTSRTTGEQNSKPIARSSGDNKAAKETSPSERKMEVKTGEGRDSDTKIYSKVPMSTSEDNKPSSESKHKSSSRSVSSTNGIADMPTSDAKTTTLDADNSMQDSGSSKKSKNSSGSNNKQNYKPIHSSVSFQEDVKKPEGTTSSASQPRIEGDQTTNPPTTKPSVEENIILGVALDRSKRTLPIEDDTPSSPQTSLGSKDLAAASLNGNVASGATTPDKETKRQSPPTTSSIE 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3999600 4007965 + CmaCh16G007470.1 Cma16g00747 311345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00747 738 Gene3D - 193 297 - -
Cma16g00747 738 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 729 IPR045042 -
Cma16g00747 738 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 729 - -
Cma16g00747 738 Gene3D - 299 354 IPR023408 -
Cma16g00747 738 Pfam Mechanosensitive ion channel 241 447 IPR006685 GO:0016020|GO:0055085
Cma16g00747 738 MobiDBLite consensus disorder prediction 690 707 - -
Cma16g00747 738 MobiDBLite consensus disorder prediction 713 738 - -
Cma16g00747 738 MobiDBLite consensus disorder prediction 531 553 - -
Cma16g00747 738 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cma16g00747 738 MobiDBLite consensus disorder prediction 509 530 - -
Cma16g00747 738 MobiDBLite consensus disorder prediction 496 738 - -
Cma16g00747 738 MobiDBLite consensus disorder prediction 575 669 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00199 Cma-Chr12:935507 Cma16g00747 Cma-Chr16:3999600 0 dispersed
Cma12g00875 Cma-Chr12:6573278 Cma16g00747 Cma-Chr16:3999600 4.88E-10 dispersed
Cma16g00747 Cma-Chr16:3999600 Cma05g00546 Cma-Chr5:2650712 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00747 K22047 - csv:101217250 1129.78