Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00747 | ATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATCTGGGACCGTGGAAAAACCATTTGCTCGAAGAAAATCTTAAGTTGACCTCTCATAGCAATAACATACGGTTACAGAATGTAGCCAGTCCATCGTCTCTTTTATTTCAGCAGAAGAACACTTGGAGCAGTCATTTATTTAGCTTGAAATACCCACCTAGTTACGTTGTGCCTTCTAGATACAATGCATTCAGGTGCCATTCGTCATTGATGACAAACCAACCACTGGATCCCTCTGGGATGAAGGCTGCTATAGTGGCGTTGACAAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGGTTAAGATGGTTCCTGCAGTTAGTATTATGATATTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACAAGAAGCCTACTCCATAGTGATAGTAACTGGAAGAAAAGCCAGACATATAAAGTCATGAGCTTGTATCTTCAACCCTTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCTAGCCAAGTTGTGAAGCAACGGGTGCTGAATTTTGTTAGGTCATTGTCCACTGTACTGGCCTTTGCGTATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGACTAGTGAATCCAGTGATGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTGTACTCGGCAGTATGGGTTGCTGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTGTTGCTGACATTAGCTGGCCGCGAGATTTTCACCAACTTTCTCTCAAGTGTAATGATTCATGCAACCCGTCCTTTCGTTGTAAATGAGTGGATCCAAACGAAGATCGAGGGCTATGAAGTTTCTGGAACTGTTGAGCATGTAGGGTGGTGGTCGCCAACGATCATCAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTTACCATGAATGTTGTGAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCCATCAGCCATTTGGATGTCAGTAAAATCAATAATATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTTTTTTTGGAAAACGTGAATCCTGAAAATCAGGCCCTTTTGATTTTGATATCTTGCTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTGAAGGAAGCTATATTTTTGGATCTTCTTAGAGTCATTAGACATCACCGAGCTCGACTTGCGACACCAATCCGCACAGTGCAGAAGATGCATAGTGATTCAGACTTGGAAAGCGTTCCATTTTCTGATTCAATATTTGGTCATGGTGGTGCAACTTTGAATCGCCGCATGCTGATGATTGAACCCCCCTACAAAGTTTACGGAGATGATCGAAAGCAAAGCCATAGTAGGACATCACGCACAACTGGAGAACAAAACAGTAAGCCCATTGCACGGTCGTCGGGTGACAACAAGGCAGCTAAAGAGACATCACCATCTGAAAGAAAGATGGAAGTAAAGACTGGAGAAGGACGAGACTCCGATACAAAAATATATTCCAAAGTTCCGATGTCAACCTCTGAAGATAATAAACCAAGCAGTGAATCGAAACATAAATCATCATCAAGGTCTGTGTCGAGTACGAATGGTATCGCTGATATGCCAACTTCTGATGCCAAAACAACTACATTAGATGCTGATAATTCAATGCAAGATTCTGGCTCCTCCAAGAAATCCAAAAATAGCTCAGGGAGTAACAACAAGCAGAACTACAAGCCTATCCATTCTTCTGTTTCCTTTCAGGAAGATGTCAAGAAACCAGAAGGAACTACTTCATCAGCTTCACAGCCAAGGATAGAAGGTGATCAGACGACAAATCCACCAACAACAAAGCCCAGCGTAGAAGAGAATATAATCCTCGGCGTTGCTTTGGATCGCTCTAAGAGAACACTTCCTATCGAGGACGACACGCCATCTTCCCCTCAAACGTCGTTGGGATCAAAAGATTTGGCTGCTGCATCCCTGAATGGGAACGTGGCGAGTGGAGCAACAACTCCCGACAAGGAAACGAAACGGCAGTCTCCTCCTACCACATCTTCTATTGAATAA | 2217 | 43.03 | MVLVGSLQLSYHLGPWKNHLLEENLKLTSHSNNIRLQNVASPSSLLFQQKNTWSSHLFSLKYPPSYVVPSRYNAFRCHSSLMTNQPLDPSGMKAAIVALTRFCNVLGGCPPPVVKMVPAVSIMIFAVWGLGPFLRYTRSLLHSDSNWKKSQTYKVMSLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAIFLDLLRVIRHHRARLATPIRTVQKMHSDSDLESVPFSDSIFGHGGATLNRRMLMIEPPYKVYGDDRKQSHSRTSRTTGEQNSKPIARSSGDNKAAKETSPSERKMEVKTGEGRDSDTKIYSKVPMSTSEDNKPSSESKHKSSSRSVSSTNGIADMPTSDAKTTTLDADNSMQDSGSSKKSKNSSGSNNKQNYKPIHSSVSFQEDVKKPEGTTSSASQPRIEGDQTTNPPTTKPSVEENIILGVALDRSKRTLPIEDDTPSSPQTSLGSKDLAAASLNGNVASGATTPDKETKRQSPPTTSSIE | 738 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3999600 | 4007965 | + | CmaCh16G007470.1 | Cma16g00747 | 311345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00747 | 738 | Gene3D | - | 193 | 297 | - | - | |
Cma16g00747 | 738 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 729 | IPR045042 | - | |
Cma16g00747 | 738 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 1 | 729 | - | - | |
Cma16g00747 | 738 | Gene3D | - | 299 | 354 | IPR023408 | - | |
Cma16g00747 | 738 | Pfam | Mechanosensitive ion channel | 241 | 447 | IPR006685 | GO:0016020|GO:0055085 | |
Cma16g00747 | 738 | MobiDBLite | consensus disorder prediction | 690 | 707 | - | - | |
Cma16g00747 | 738 | MobiDBLite | consensus disorder prediction | 713 | 738 | - | - | |
Cma16g00747 | 738 | MobiDBLite | consensus disorder prediction | 531 | 553 | - | - | |
Cma16g00747 | 738 | SUPERFAMILY | Sm-like ribonucleoproteins | 283 | 353 | IPR010920 | - | |
Cma16g00747 | 738 | MobiDBLite | consensus disorder prediction | 509 | 530 | - | - | |
Cma16g00747 | 738 | MobiDBLite | consensus disorder prediction | 496 | 738 | - | - | |
Cma16g00747 | 738 | MobiDBLite | consensus disorder prediction | 575 | 669 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00199 | Cma-Chr12:935507 | Cma16g00747 | Cma-Chr16:3999600 | 0 | dispersed | |
Cma12g00875 | Cma-Chr12:6573278 | Cma16g00747 | Cma-Chr16:3999600 | 4.88E-10 | dispersed | |
Cma16g00747 | Cma-Chr16:3999600 | Cma05g00546 | Cma-Chr5:2650712 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00747 | K22047 | - | csv:101217250 | 1129.78 |