Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00752 ATGGAGGGAATGCCGCTCCCAATACCCCGTACAGTGGAGGAGGTCTATGGAGACTTCAAAGGCAGGCGTGCTGGCTTGATTAAAGCCCTAACCACTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACCTATGTCTCTATGGACTTCCGAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCTTTAGGTATAAATTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGACGTCCCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAAGACGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGCGTGAAGATTACTCCCGCAAAGGCGGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 768 48.18 MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNGSKSKSSGKTSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4049411 4057349 + CmaCh16G007520.1 Cma16g00752 311350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00752 255 MobiDBLite consensus disorder prediction 139 201 - -
Cma16g00752 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cma16g00752 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cma16g00752 255 MobiDBLite consensus disorder prediction 139 162 - -
Cma16g00752 255 MobiDBLite consensus disorder prediction 183 200 - -
Cma16g00752 255 CDD PHD_AL_plant 202 251 IPR044104 -
Cma16g00752 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cma16g00752 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cma16g00752 255 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Cma16g00752 255 MobiDBLite consensus disorder prediction 163 182 - -
Cma16g00752 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Cma16g00752 255 SMART PHD_3 201 249 IPR001965 -
Cma16g00752 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Cma16g00752 255 Pfam PHD-finger 202 251 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00752 Cma-Chr16:4049411 Cma17g00700 Cma-Chr17:5789057 5.19E-109 dispersed
Cma16g00752 Cma-Chr16:4049411 Cma04g00878 Cma-Chr4:4526704 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36573 PF12165 Alfin 4.10E-68 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00752 - - csv:101212601 477.248