Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00752 | ATGGAGGGAATGCCGCTCCCAATACCCCGTACAGTGGAGGAGGTCTATGGAGACTTCAAAGGCAGGCGTGCTGGCTTGATTAAAGCCCTAACCACTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACCTATGTCTCTATGGACTTCCGAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCTTTAGGTATAAATTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGACGTCCCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAAGACGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGCGTGAAGATTACTCCCGCAAAGGCGGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA | 768 | 48.18 | MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNGSKSKSSGKTSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4049411 | 4057349 | + | CmaCh16G007520.1 | Cma16g00752 | 311350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00752 | 255 | MobiDBLite | consensus disorder prediction | 139 | 201 | - | - | |
Cma16g00752 | 255 | ProSiteProfiles | Zinc finger PHD-type profile. | 199 | 251 | IPR019787 | - | |
Cma16g00752 | 255 | SUPERFAMILY | FYVE/PHD zinc finger | 190 | 252 | IPR011011 | - | |
Cma16g00752 | 255 | MobiDBLite | consensus disorder prediction | 139 | 162 | - | - | |
Cma16g00752 | 255 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
Cma16g00752 | 255 | CDD | PHD_AL_plant | 202 | 251 | IPR044104 | - | |
Cma16g00752 | 255 | ProSitePatterns | Zinc finger PHD-type signature. | 202 | 248 | IPR019786 | - | |
Cma16g00752 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 250 | IPR013083 | - | |
Cma16g00752 | 255 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355|GO:0042393 | |
Cma16g00752 | 255 | MobiDBLite | consensus disorder prediction | 163 | 182 | - | - | |
Cma16g00752 | 255 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 7 | 1 | 252 | - | - | |
Cma16g00752 | 255 | SMART | PHD_3 | 201 | 249 | IPR001965 | - | |
Cma16g00752 | 255 | PANTHER | CPG BINDING PROTEIN | 1 | 252 | IPR045104 | GO:0006355|GO:0042393 | |
Cma16g00752 | 255 | Pfam | PHD-finger | 202 | 251 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00752 | Cma-Chr16:4049411 | Cma17g00700 | Cma-Chr17:5789057 | 5.19E-109 | dispersed | |
Cma16g00752 | Cma-Chr16:4049411 | Cma04g00878 | Cma-Chr4:4526704 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36573 | PF12165 | Alfin | 4.10E-68 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00752 | - | - | csv:101212601 | 477.248 |