Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00762 ATGGATGAGAGATGCGAGAACGGCCGCGAAATTGATGGGTCTGAGAGCTTGGCGGAATCGCCGTTTACAGAGGATAGAGATTCTGTATCGCTCACGCTAGGGGAGCCGCTCTTGCGTGCCAGTACTGCGAGGATCAGTACTACCTCGCAACTCGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCTTGGACTACGAGATTATTGAGAATGATCTTTTCAAGCAGGACTGGAGGTCAAGAAGAAAGGTCGAGATATTTCAGTATGTCATCCTCAAATGGACGCTGTGCCTTTTCATTGGTCTAATTACCGGGGTCGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTTCTGCTGACGAATAATCTGATGCTCAAGGAAAAGTACTATCAGGCCTTCGCAGTATACGTTGGTTCCAATATTGTCTTAGCTGCTGCTGCTGCAACCCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGTATTCCTGAGGTGAAAGCATACCTTAACGGTATCGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAGGGAGGCTCTCGCAAATACCGCCTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCTGTTGTCTTGAGGGGTTTCATGGAATTTTGTAGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCGAAATCCACACCGAAAACTCCGCTTATGGCACCCCAGATCTTATTGCAATTATTTTACTTGGAGTCATTGGAGGTGTGCTTGGAAGCCTTTACAACTACCTCGTCGATAAGGTTCTTCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCAAAGCTCATCCTTGTTGTTGGCGTTTCCATATTGACAACCTGCGTCTCCTTTGGTCTTCCTTGGTTCTCACAATGTTTACCTTGCCCATCTGACTTGGACGATCAATGCCCTACCGTTGGTCGCTCGGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATCCGGAGCCTGCTCACATCTGCTAGTGACAAACATTTTCAGTTGTCCTCACTTTTTATATTCTTTGGTGCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCCGTGCCTTCAGGGCTCTTTATTCCTGTGATTCTGGCAGGGGCCTCTTATGGTCGCATTATAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGCCTCTATGCCCTTCTCGGTGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTTTGTGTCATACTCCTGGAGCTTACCAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTGATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCGGAACCATTTATGAGGCAATTGGTTGCTGGTGGTGTGGCTTCTGGTCCTTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTATCCATGCTTTGAAAACGACGAACCACAATGGGTTTCCTGTAATTGATGAACTGCCTTCCTCAAATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATTTGCTTGTTTTGCTTAAAGAAAAAAAGTTTACTAAGCAAAAGGTGTCAATTAGATCAGAAATTTTGAGGCACTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAACTTGAAGATTTGAACTTCAATGAGGAGGAGATGGAAATGTTTGCTGATCTTCATCCCATTACAAACACATCACCCTACACGGTGGTTGAATCGATGTCCCTAGCTAAAGCGGCTATTCTCTTTCACGCACTCGGCTTGAGGCACCTATTGAGGCCTCCCATTGCTGGAATTCTTACACGGCACGACTTCATGCCGGAGCATATTTTGGGACTGTACCCACATCTCAACCCCCACAAGTAG 2310 45.11 MDERCENGREIDGSESLAESPFTEDRDSVSLTLGEPLLRASTARISTTSQLAIVGSNICPIESLDYEIIENDLFKQDWRSRRKVEIFQYVILKWTLCLFIGLITGVVGFFNNIAVENIAGHKLLLTNNLMLKEKYYQAFAVYVGSNIVLAAAAATLCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGKCGLFGEGGLIMFEIHTENSAYGTPDLIAIILLGVIGGVLGSLYNYLVDKVLRTYSIINERGPGSKLILVVGVSILTTCVSFGLPWFSQCLPCPSDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRSLLTSASDKHFQLSSLFIFFGAIYCLGIITYGIAVPSGLFIPVILAGASYGRIIGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIIHALKTTNHNGFPVIDELPSSNSSELCGLVLRSHLLVLLKEKKFTKQKVSIRSEILRHFKAHDFAKAGSGKGVKLEDLNFNEEEMEMFADLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLRPPIAGILTRHDFMPEHILGLYPHLNPHK 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4173796 4179580 - CmaCh16G007620.1 Cma16g00762 311360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00762 769 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 Gene3D - 606 695 - -
Cma16g00762 769 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 32 769 - -
Cma16g00762 769 SUPERFAMILY CBS-domain pair 587 754 IPR046342 -
Cma16g00762 769 CDD CBS_pair_voltage-gated_CLC_euk_bac 586 756 - -
Cma16g00762 769 SUPERFAMILY Clc chloride channel 71 585 IPR014743 -
Cma16g00762 769 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 32 769 - -
Cma16g00762 769 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma16g00762 769 CDD ClC_6_like 62 583 - -
Cma16g00762 769 MobiDBLite consensus disorder prediction 1 23 - -
Cma16g00762 769 Gene3D Clc chloride channel 85 584 - -
Cma16g00762 769 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma16g00762 769 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma16g00762 769 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma16g00762 769 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma16g00762 769 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02960 Cma-Chr4:19457891 Cma16g00762 Cma-Chr16:4173796 0 dispersed
Cma08g01154 Cma-Chr8:7103231 Cma16g00762 Cma-Chr16:4173796 6.55E-42 dispersed
Cma12g01184 Cma-Chr12:9289774 Cma16g00762 Cma-Chr16:4173796 1.09E-71 dispersed
Cma15g00080 Cma-Chr15:374045 Cma16g00762 Cma-Chr16:4173796 0 dispersed
Cma16g00762 Cma-Chr16:4173796 Cma17g00249 Cma-Chr17:1275208 0 dispersed
Cma16g00762 Cma-Chr16:4173796 Cma04g00886 Cma-Chr4:4607734 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00762 K05016 - csv:101209987 1317.75