Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00767 | ATGGCTCTGGTCCTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAGGCTTTTATAGCTGCTGAATACAATGGTGTCAAAATTGATCTTTCTCCAGATTTTGTCATGGGCGTAACCAATAAAAGTCCTGTATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTGTTGGAAACACCCGACGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGTTTGAAGGACAGCAGTTTATTTGGCTCTTCCTCAATTGACTACGGACATGTTGAACAATGGATCGATTTCTCCACAATGGAAATAGATGCTCATATTTCAACAATTTTGAGGCCTAGATTTGGATATGGTGTTTTTCATCCTGCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGATCTTTTGCTGCTTTGAACTCTTACCTTGCTTCAAACACATTCCTTGTTGGTCATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTCTATTTGGGATTTACGTACATATTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTCGAGAGGTACTTCTGGACGTTGGTCAATCAACCAAATTTCCGAAAGATAATTGGTGAGGTAAAGCAGACTGATGCCATTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGCAGAAGAAGAGGCACCAAAGCCGAAGGCCAAAAATCCTCTCGACCTGCTTCCTCCCAGTAAGATGATTTTGGACGAGTGGAAACGTCTCTACTCGAACACTAAAACCAACTTCCGCGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGATACTCCCTTTGGTTCTGTGATTACAAGTACAACGACGAGAACACAGTTTCATTCGTGACTCTGAACAAAGTCAGCGGATTTCTGCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTCGTGATCGGATCAGAGGCTCCATTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATCCCGCAATTTGTGATCGATGAATGCTACGATATGGAACTGTACGAGTGGAAGAAGGTGGATATCTCCGACGAAGCCCAGAAGGAGAGGGTGAACCAAATGATTGAAGACCAGGAACCGTTCGAGGGTGAAGCTCTTTTGGATGCTAAATGCTTCAACTTTCCTTTCAACTTCTTCCATTTCTCTACTGCGAGCGATCGAGCGTTTGAATTTGTTGCAGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCTGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTTGAACTTGGTCTTCGGGATTGA | 1644 | 44.1 | MALVLHSWKANKNAYKAFIAAEYNGVKIDLSPDFVMGVTNKSPVYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSSLFGSSSIDYGHVEQWIDFSTMEIDAHISTILRPRFGYGVFHPAVEEAANAALKRSFAALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYILTKSFTSEFPHVERYFWTLVNQPNFRKIIGEVKQTDAIPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAAEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFNFPFNFFHFSTASDRAFEFVAEVLDTDSQTIDMSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKHSSSSSKTGSMVAIILLGFLVVVLLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD | 547 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4206363 | 4213994 | + | CmaCh16G007670.1 | Cma16g00767 | 311365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00767 | 547 | CDD | GST_C_EF1Bgamma_like | 89 | 209 | - | - | |
Cma16g00767 | 547 | SUPERFAMILY | eEF1-gamma domain | 253 | 411 | IPR036433 | GO:0003746|GO:0006414 | |
Cma16g00767 | 547 | Gene3D | Glutaredoxin | 1 | 74 | - | - | |
Cma16g00767 | 547 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 412 | IPR044628 | GO:0004364 | |
Cma16g00767 | 547 | Gene3D | - | 79 | 212 | - | - | |
Cma16g00767 | 547 | SUPERFAMILY | GST C-terminal domain-like | 73 | 210 | IPR036282 | - | |
Cma16g00767 | 547 | SUPERFAMILY | Thioredoxin-like | 2 | 78 | IPR036249 | - | |
Cma16g00767 | 547 | Pfam | Elongation factor 1 gamma, conserved domain | 251 | 359 | IPR001662 | GO:0003746|GO:0006414 | |
Cma16g00767 | 547 | MobiDBLite | consensus disorder prediction | 213 | 255 | - | - | |
Cma16g00767 | 547 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 252 | 412 | IPR001662 | GO:0003746|GO:0006414 | |
Cma16g00767 | 547 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 252 | 412 | IPR036433 | GO:0003746|GO:0006414 | |
Cma16g00767 | 547 | SFLD | Glutathione Transferase (cytosolic) | 4 | 189 | IPR040079 | - | |
Cma16g00767 | 547 | MobiDBLite | consensus disorder prediction | 222 | 252 | - | - | |
Cma16g00767 | 547 | Pfam | Glutathione S-transferase, C-terminal domain | 125 | 196 | IPR004046 | - | |
Cma16g00767 | 547 | CDD | GST_N_EF1Bgamma | 3 | 77 | - | - | |
Cma16g00767 | 547 | SFLD | Main (cytGST) | 4 | 189 | - | - | |
Cma16g00767 | 547 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 82 | IPR004045 | - | |
Cma16g00767 | 547 | SMART | EF1G_2 | 251 | 359 | IPR001662 | GO:0003746|GO:0006414 | |
Cma16g00767 | 547 | Pfam | Glutathione S-transferase, N-terminal domain | 5 | 76 | IPR004045 | - | |
Cma16g00767 | 547 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 86 | 214 | IPR010987 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00409 | Cma-Chr8:2344840 | Cma16g00767 | Cma-Chr16:4206363 | 6.32E-10 | dispersed | |
Cma16g00767 | Cma-Chr16:4206363 | Cma17g01106 | Cma-Chr17:7765553 | 3.98E-09 | dispersed | |
Cma04g01937 | Cma-Chr4:10560539 | Cma16g00767 | Cma-Chr16:4206363 | 0 | transposed | |
Cma06g00887 | Cma-Chr6:5603706 | Cma16g00767 | Cma-Chr16:4206363 | 0 | transposed | |
Cma16g00767 | Cma-Chr16:4206363 | Cma04g00892 | Cma-Chr4:4645427 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00767 | K03233 | - | csv:101215571 | 696.812 |