Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00767 ATGGCTCTGGTCCTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAGGCTTTTATAGCTGCTGAATACAATGGTGTCAAAATTGATCTTTCTCCAGATTTTGTCATGGGCGTAACCAATAAAAGTCCTGTATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTGTTGGAAACACCCGACGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGTTTGAAGGACAGCAGTTTATTTGGCTCTTCCTCAATTGACTACGGACATGTTGAACAATGGATCGATTTCTCCACAATGGAAATAGATGCTCATATTTCAACAATTTTGAGGCCTAGATTTGGATATGGTGTTTTTCATCCTGCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGATCTTTTGCTGCTTTGAACTCTTACCTTGCTTCAAACACATTCCTTGTTGGTCATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTCTATTTGGGATTTACGTACATATTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTCGAGAGGTACTTCTGGACGTTGGTCAATCAACCAAATTTCCGAAAGATAATTGGTGAGGTAAAGCAGACTGATGCCATTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGCAGAAGAAGAGGCACCAAAGCCGAAGGCCAAAAATCCTCTCGACCTGCTTCCTCCCAGTAAGATGATTTTGGACGAGTGGAAACGTCTCTACTCGAACACTAAAACCAACTTCCGCGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGATACTCCCTTTGGTTCTGTGATTACAAGTACAACGACGAGAACACAGTTTCATTCGTGACTCTGAACAAAGTCAGCGGATTTCTGCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTCGTGATCGGATCAGAGGCTCCATTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATCCCGCAATTTGTGATCGATGAATGCTACGATATGGAACTGTACGAGTGGAAGAAGGTGGATATCTCCGACGAAGCCCAGAAGGAGAGGGTGAACCAAATGATTGAAGACCAGGAACCGTTCGAGGGTGAAGCTCTTTTGGATGCTAAATGCTTCAACTTTCCTTTCAACTTCTTCCATTTCTCTACTGCGAGCGATCGAGCGTTTGAATTTGTTGCAGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCTGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTTGAACTTGGTCTTCGGGATTGA 1644 44.1 MALVLHSWKANKNAYKAFIAAEYNGVKIDLSPDFVMGVTNKSPVYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSSLFGSSSIDYGHVEQWIDFSTMEIDAHISTILRPRFGYGVFHPAVEEAANAALKRSFAALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYILTKSFTSEFPHVERYFWTLVNQPNFRKIIGEVKQTDAIPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAAEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFNFPFNFFHFSTASDRAFEFVAEVLDTDSQTIDMSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKHSSSSSKTGSMVAIILLGFLVVVLLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4206363 4213994 + CmaCh16G007670.1 Cma16g00767 311365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00767 547 CDD GST_C_EF1Bgamma_like 89 209 - -
Cma16g00767 547 SUPERFAMILY eEF1-gamma domain 253 411 IPR036433 GO:0003746|GO:0006414
Cma16g00767 547 Gene3D Glutaredoxin 1 74 - -
Cma16g00767 547 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364
Cma16g00767 547 Gene3D - 79 212 - -
Cma16g00767 547 SUPERFAMILY GST C-terminal domain-like 73 210 IPR036282 -
Cma16g00767 547 SUPERFAMILY Thioredoxin-like 2 78 IPR036249 -
Cma16g00767 547 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746|GO:0006414
Cma16g00767 547 MobiDBLite consensus disorder prediction 213 255 - -
Cma16g00767 547 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746|GO:0006414
Cma16g00767 547 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746|GO:0006414
Cma16g00767 547 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
Cma16g00767 547 MobiDBLite consensus disorder prediction 222 252 - -
Cma16g00767 547 Pfam Glutathione S-transferase, C-terminal domain 125 196 IPR004046 -
Cma16g00767 547 CDD GST_N_EF1Bgamma 3 77 - -
Cma16g00767 547 SFLD Main (cytGST) 4 189 - -
Cma16g00767 547 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cma16g00767 547 SMART EF1G_2 251 359 IPR001662 GO:0003746|GO:0006414
Cma16g00767 547 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cma16g00767 547 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00409 Cma-Chr8:2344840 Cma16g00767 Cma-Chr16:4206363 6.32E-10 dispersed
Cma16g00767 Cma-Chr16:4206363 Cma17g01106 Cma-Chr17:7765553 3.98E-09 dispersed
Cma04g01937 Cma-Chr4:10560539 Cma16g00767 Cma-Chr16:4206363 0 transposed
Cma06g00887 Cma-Chr6:5603706 Cma16g00767 Cma-Chr16:4206363 0 transposed
Cma16g00767 Cma-Chr16:4206363 Cma04g00892 Cma-Chr4:4645427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00767 K03233 - csv:101215571 696.812