Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00776 ATGTTTTTCCTTGTTTTTACATTCTTGTCTCTTCTAGGCTCCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTCAATTCTCTGACTCTGCTATACTAAGCACTTGGAATGCCTCAAACTTCAGCTCAGTTTGTACGTGGGTCGGGATTCAGTGCACTGATGGACGAGTTGTGTCGGTTGACTTGAGAGATTTGAACCTTGGTGGCTCTGTTTCACCATTGATTTCGAGTCTTGACCAACTTTCTGAGTTGTCTTTAGCAGGAAATAACTTCTCTGGTGGCATTGAAGTAGCGAATTTGAGTTACCTTCGATTCCTCAACATCTCAACCAATCAGTTCACTGGGACTCTGGACTGGAACTTCTCGAGCCTGCCGAACTTGGAGGTGTTCGATGCCTATGACAACAACTTCTCTGCTCAGCTCCCCACTAAGATTTTGAACTTACGGAACCTCAAATACTTGGACCTTGGAGGTAACTATTTCCATGGAAAAATCCCTGAGGGCTATGGCAGTTTCGAAGAGTTGCAATATCTTTCTCTTGAAGGAAATAATTTGGTTGGGAAAATCCCAGAAGAGCTGGGAAATCTCACGAATTTGAGAGAAATTTACTTGGGTCATTTCAATGCTTTCGAAGGTGGGATTCCACCTGAGCTTGGGAAGTTGGTCAATTTGGTTATCATGCAGATTACAGACTGCAGTTTGAATGGTCAAATTCCTCATGAACTGGGGAATTTGAAGGCCTTGAACACACTATATTTGTATACAAATCAACTCTTCGGTTCGATTCCGAAGCAGATAGGAAATTTGACAAACTTGGTCTATCTCGATCTCTCCAACAATGCACTCACCGGAGAAATCCCATCTGAGTTTGTTAATCTCAAACAGCTCAAGCTTTACAACCTCTTCATCAACAAACTGCACGGATCTATTCCAGACTACATAGCAGATTTACCAAACTTGGAGACATTGGCACTGTGGATGAACAACTTTACCGGCACAATCCCGAAGATTCTTGGCCAAAATGGGAGGCTTCGGCTCCTCGATTTGTCTTCAAACAAGCTCACGGGTATAATACCGCAAGATTTGTGTTCATCGAATCAGCTGACAATACTGATTCTGATGAACAACTTCCTGTTTGGACCAATCCCTGATGGTTTGGGGACATGTACCAGTCTTATAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAACTAAATTTAGCAGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAAAATTGGGAGAGTTCATCAAAACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTCTCTTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTTAGCAGGAACACACTTTCTGGTCAAATTCCTCCTGAAATAGGGAATTGTATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCGAATATAAATATTCTCAATTACCTCAACTTGTCGAGAAATCATCTAAATCAATCCCTACCGAAATCAATAGGGGCAATGAAGAGCCTTACGATTGCTGATTTCTCCTTCAATGATTTCTCCGGAAAGTTACCGGAATCAGGACAACTTGCCTTCTTCAATGCATCATCCTTTGCCGGAAATCCTCAACTCTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACAGCGACAAAACCGGGAAAAACTCCGGCGTACTTCAAGCTAATCTTCGCTCTCGGCCTGCTGATTTGTTCTCTAGTGTTCGCCATAGCGGCCGTAGTCAAAGCGAAATCATTCAAAAGAAACGGATCGAGTTCATGGAAAATGACCTCATTCCAAAAGCTCGATTTCACCGTCTACGACGTATTGGAGTGCGTGAAAGACGGCAACGTGATCGGAAGAGGCGGCGCTGGCATTGTCTACCACGGGAAAATGCCGAACGGAGTCGAGATCGCAGTGAAGAAACTCCTAGGATTTGGCCCTAACAGTCACGACCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATCGTCAGATTACTCGCATTCTGCTCCAATAAAGAGACAAATCTCCTCGTATACGAATACATGAGGAACGGAAGCTTAGGCGAAGCACTCCACGGCAAAAAGGCCTCGTTTCTCGGATGGAATTTGAGGTGCAAAATCGCCATTGAGGCTGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCACCGAGACGTGAAATCGAACAACATTCTCTTGAATTCCAACTTCGAAGCTCACGTCGCCGATTTCGGTCTGGCGAAGTTCATGTTCGAGGGCGGCGCGTCGGAATGCATGTCGGTGATCGCCGGCTCTTACGGCTACATCGCTCCTGAATATGCGTACACATTGAGAGTCGACGAGAAAAGTGACGTATATAGTTTTGGAGTTGTGCTATTAGAGCTTTTGACGGGTCGTCGTCCAGTTGGAGATTTCGAGGACGGAGTGGTTGACATAGCACAATGGTGCAAAAGAGCTCTAACAAATGGTGAGAATGAAAACGACATTATTTGCATAGTTGACAAAAGGATCGGGATGGTGCCTAAAGAGGAAGCAAAACACTTATTCTTCATAGCAATGTTATGTGTGCAAGAGAACAGCGTGGAAAGACCAACAATGAGAGAAGTGGTTCAAATGTTGGCCGAGTTTTCTCATCAGTTTCCCAAATGTTTCCAATCTCCCTCTTCTTCTTCTTCTCCCGATCAAAATTTGAAGAACGGCGAAAAGGAGAGAGAAGATCCGTCGAAATCCAAACTCGATCTTTTGGTTTAA 3003 44.19 MFFLVFTFLSLLGSSSSHSLVSDFHVLLALKQGFQFSDSAILSTWNASNFSSVCTWVGIQCTDGRVVSVDLRDLNLGGSVSPLISSLDQLSELSLAGNNFSGGIEVANLSYLRFLNISTNQFTGTLDWNFSSLPNLEVFDAYDNNFSAQLPTKILNLRNLKYLDLGGNYFHGKIPEGYGSFEELQYLSLEGNNLVGKIPEELGNLTNLREIYLGHFNAFEGGIPPELGKLVNLVIMQITDCSLNGQIPHELGNLKALNTLYLYTNQLFGSIPKQIGNLTNLVYLDLSNNALTGEIPSEFVNLKQLKLYNLFINKLHGSIPDYIADLPNLETLALWMNNFTGTIPKILGQNGRLRLLDLSSNKLTGIIPQDLCSSNQLTILILMNNFLFGPIPDGLGTCTSLIKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGTLPSSLSNFSSLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNTLSGQIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNINILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTATKPGKTPAYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRCKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFEGGASECMSVIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFEDGVVDIAQWCKRALTNGENENDIICIVDKRIGMVPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFSHQFPKCFQSPSSSSSPDQNLKNGEKEREDPSKSKLDLLV 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4268101 4272077 + CmaCh16G007760.1 Cma16g00776 311374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00776 1000 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Cma16g00776 1000 Gene3D Phosphorylase Kinase; domain 1 649 760 - -
Cma16g00776 1000 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515
Cma16g00776 1000 PANTHER UNNAMED PRODUCT 5 963 - -
Cma16g00776 1000 SMART serkin_6 684 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00776 1000 SMART LRR_typ_2 133 157 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 278 301 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 254 277 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 351 374 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 326 350 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 545 569 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 497 521 IPR003591 -
Cma16g00776 1000 SMART LRR_typ_2 181 205 IPR003591 -
Cma16g00776 1000 Gene3D Ribonuclease Inhibitor 316 618 IPR032675 -
Cma16g00776 1000 Pfam Protein tyrosine and serine/threonine kinase 687 957 IPR001245 GO:0004672|GO:0006468
Cma16g00776 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 5 963 - -
Cma16g00776 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Cma16g00776 1000 SUPERFAMILY L domain-like 351 608 - -
Cma16g00776 1000 Gene3D Transferase(Phosphotransferase) domain 1 761 974 - -
Cma16g00776 1000 ProSiteProfiles Leucine-rich repeat profile. 352 373 IPR001611 GO:0005515
Cma16g00776 1000 SUPERFAMILY RNI-like 68 413 - -
Cma16g00776 1000 Gene3D Ribonuclease Inhibitor 22 127 IPR032675 -
Cma16g00776 1000 SUPERFAMILY Protein kinase-like (PK-like) 668 958 IPR011009 -
Cma16g00776 1000 MobiDBLite consensus disorder prediction 968 1000 - -
Cma16g00776 1000 Pfam Leucine rich repeat 327 385 IPR001611 GO:0005515
Cma16g00776 1000 ProSiteProfiles Protein kinase domain profile. 684 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00776 1000 Gene3D Ribonuclease Inhibitor 218 315 IPR032675 -
Cma16g00776 1000 Gene3D Ribonuclease Inhibitor 128 217 IPR032675 -
Cma16g00776 1000 PRINTS Leucine-rich repeat signature 353 366 - -
Cma16g00776 1000 PRINTS Leucine-rich repeat signature 497 510 - -
Cma16g00776 1000 MobiDBLite consensus disorder prediction 981 1000 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00002 Cma-Chr7:17720 Cma16g00776 Cma-Chr16:4268101 0 dispersed
Cma16g00736 Cma-Chr16:3881525 Cma16g00776 Cma-Chr16:4268101 0 dispersed
Cma16g00776 Cma-Chr16:4268101 Cma04g00900 Cma-Chr4:4686817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69200 PF07714 PK_Tyr_Ser-Thr 1.40E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00776 - - csv:101215633 1724.91