Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00781 ATGTCGGTTTGCTCTTCTTCTTCTTCTTCCTCTTTATCATCATCCGGGTACTTTGCCAAGGCCTGGATTGTGCACGGGATTGTTGCCGGAGTCGCCATTGGCGCCGCCATCGGAGCTCGAGCTTATTTGGGTCGATCCAACAAATTCCGTAACCGCGTTGTCGGAATCATTCCCGCCCGTTTCGCCTCTTCACGGTTCCAGGGGAAGCCTCTCGTTGAGATTCTTGGAAAACCCATGATCCAGAGAACATGGGAAAGGGCAAGAATGGCTACTACATTGGACTGTGTTGTTGTTGCAACCGATGATGCTAAGATTGCACAATGCTGTAAAGGATTTGGTGCTGATGTTGTAATGACATCAGAGTCATGTAGGAACGGAACTGAGCGTTGTAATGAAGCGCTTCAGAAGCTTGAGAAGAAATACGATATCGTCGTAAATATTCAAGGGGACGAGCCCCTTATTGAGCCGGAGATCATCGATGGCATCGTTAAAGCTCTGCAGGCTGCCCCGGATGCAGTGTTCAGCACTGCAGTGACATCCTTACGACCCGAAGATGCGTTCGATCCCAATCGGGTGAAGTGCGTAGTGGATAATCGTGGTTATGCTATTTATTTCTCAAGAGGATTGATCCCTTTCAACAAGTCAGGAAAGGTCAACCTTCAATATCTTTATTTGCTTCATCTTGGAATCCAGAGCTTTGATTCGAAGTTTTTAAGTATGTATCCTGAACTCGAACCAACACCGTTGCAACTAGAAGAGGATCTAGAACAGCTAAAAGTATTAGAACATGGCTACAAAATGAAGGTGATTAAGGTTGACCATGAGGCTCATGGTGTTGATGTTCCTGAAGATGTAGAAAAGATAGAATCTTATATGAAGGAAAGGAACTTGTCTTAA 897 45.37 MSVCSSSSSSSLSSSGYFAKAWIVHGIVAGVAIGAAIGARAYLGRSNKFRNRVVGIIPARFASSRFQGKPLVEILGKPMIQRTWERARMATTLDCVVVATDDAKIAQCCKGFGADVVMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGIVKALQAAPDAVFSTAVTSLRPEDAFDPNRVKCVVDNRGYAIYFSRGLIPFNKSGKVNLQYLYLLHLGIQSFDSKFLSMYPELEPTPLQLEEDLEQLKVLEHGYKMKVIKVDHEAHGVDVPEDVEKIESYMKERNLS 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4295809 4298447 + CmaCh16G007810.1 Cma16g00781 311379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00781 298 PANTHER BNAA05G35640D PROTEIN 1 298 - -
Cma16g00781 298 TIGRFAM kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 55 286 IPR004528 GO:0008690
Cma16g00781 298 Hamap 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 51 293 IPR004528 GO:0008690
Cma16g00781 298 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 44 293 IPR029044 -
Cma16g00781 298 CDD CMP-KDO-Synthetase 52 291 IPR004528 GO:0008690
Cma16g00781 298 SUPERFAMILY Nucleotide-diphospho-sugar transferases 53 295 IPR029044 -
Cma16g00781 298 PANTHER 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE 1 298 - -
Cma16g00781 298 Pfam Cytidylyltransferase 55 264 IPR003329 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00781 K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] - csv:101204753 489.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00905 Cma16g00781 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00781 Cma-Chr16:4295809 Cma04g00905 Cma-Chr4:4707319 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g233 . . . . . . . . Cmo16g00844 Cmo04g00971 . . . . . . . . . . . . . . Cla10g00648 Cam10g0644 Cec10g0665 Cco10g0640 Clacu10g0667 Cmu10g1494 Cre10g0875 . . . Cone15ag1058 . Csa03g00629 . . . . . Bda12g00867 . . . . . . . Cma04g00905 Cma16g00781 Car04g00848 . Cpe14g00680 . . . . . . . . . . . . . . . Lsi05g00716 . Chy06g01699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005144 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00781 Cma_Chr16 FPKM 1.980574 0.0 7.563282 6.66485 2.980857 2.88972 2.488575 8.739834 8.502997 8.567861