Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00782 ATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCTTCCGCCTTGGCTTCCACTGCTTTCTCCGGCCGTCGGAGCTCCGTCGCCCTCCCGCAGTACAGAGGCTTGAAGATCGGTCACAGTTTCACTTCCCAGTCTATAAGATCTGCGAGATCTAATGCCAGATTTGCTCAGCGTTCTGGAAGAATCGTCTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGGATTCACTGGTTCTTAAATCCGAATTACCTGTCCTAGTCGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGCATGATTCATCCGATCGTTGATGAACTATCTAAACAGTATGCTGGTAAGTTCAAATTTTACAAGGTGGATACTGATAGCAACTCTGGTGTTGCATCCCGCTATGGTATCAGAAGCATACCAACTGTCATTATCTTCAAAGATGGTGAGAAAAAGGAGGCAATAATAGGTGCAGTTCCCAAAGCAACTTTGACTGCCAGCATTGAAAAATTCTTGTAG 534 47.94 MATVLDSLTLPCSSALASTAFSGRRSSVALPQYRGLKIGHSFTSQSIRSARSNARFAQRSGRIVCEAQETAAIVPAASEATWDSLVLKSELPVLVEFWAPWCGPCRMIHPIVDELSKQYAGKFKFYKVDTDSNSGVASRYGIRSIPTVIIFKDGEKKEAIIGAVPKATLTASIEKFL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4299753 4303056 + CmaCh16G007820.1 Cma16g00782 311380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00782 177 TIGRFAM thioredoxin: thioredoxin 78 176 IPR005746 GO:0015035
Cma16g00782 177 ProSiteProfiles Thioredoxin domain profile. 68 177 IPR013766 -
Cma16g00782 177 CDD TRX_family 80 174 - -
Cma16g00782 177 SUPERFAMILY Thioredoxin-like 74 177 IPR036249 -
Cma16g00782 177 Pfam Thioredoxin 77 174 IPR013766 -
Cma16g00782 177 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Cma16g00782 177 Gene3D Glutaredoxin 74 177 - -
Cma16g00782 177 PRINTS Thioredoxin family signature 93 101 - -
Cma16g00782 177 PRINTS Thioredoxin family signature 101 110 - -
Cma16g00782 177 PRINTS Thioredoxin family signature 141 152 - -
Cma16g00782 177 PANTHER GEO12009P1 10 177 - -
Cma16g00782 177 PANTHER THIOREDOXIN-1-LIKE 10 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00782 K03671 trxA; thioredoxin 1 - csv:101204508 300.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00906 Cma16g00782 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02416 Cma-Chr4:16678893 Cma16g00782 Cma-Chr16:4299753 6.64E-47 dispersed
Cma09g01174 Cma-Chr9:7234676 Cma16g00782 Cma-Chr16:4299753 2.38E-20 dispersed
Cma15g00632 Cma-Chr15:2989329 Cma16g00782 Cma-Chr16:4299753 3.28E-44 dispersed
Cma16g00782 Cma-Chr16:4299753 Cma07g00455 Cma-Chr7:1987884 3.81E-17 dispersed
Cma07g01265 Cma-Chr7:7018170 Cma16g00782 Cma-Chr16:4299753 9.88E-11 transposed
Cma11g01746 Cma-Chr11:11577445 Cma16g00782 Cma-Chr16:4299753 2.01E-32 transposed
Cma18g00904 Cma-Chr18:7779223 Cma16g00782 Cma-Chr16:4299753 5.04E-06 transposed
Cma16g00782 Cma-Chr16:4299753 Cma04g00906 Cma-Chr4:4711490 3.41E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00782 Cma_Chr16 FPKM 24.792742 25.920557 103.676079 100.692772 260.953552 260.4888 246.855972 63.433056 64.8424 68.607841