Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00786 ATGGATCGTGTGCTAAAGGCCGCAAGAGCATCCGGCTCTCTTAATCTTTCGAATCGCTCTCTCAGTGATGTGCCAAGTGAGGTTTATCGGAGTTTGGATGCAGTTCAGGCGGACGAGAAGTGGTGGGAGGCTGTGGAGCTACATAAGCTGATTCTAGCTCATAATAATATTCAACTGTTGGATGAGGAGCTAAGGAATTTATCATCTCTTACTGTATTAAATGTTAGTCACAACAAACTTTCTGAACTACCAGCTGCAATTGGAGAGCTTCCTGTCCTAAAGCTCTTAGATGTGTCCTTCAATTCATTAATGAGAATACCTGAGGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCGCCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTATCAGATCTGAAGGCATCAAACAATTCCATTTCCAGCTTGCCTGATGAACTTGCAAACTGCTCAAAATTGACAAAGCTTGATATGGAGGGGAACAAGCTAACGATGATACCCAAAATTTTGATTGCATCATGGACCATGCTTACTGAACTTAATGCCTCAAAGAATTTTCTTAATGGATTGCCTGAGAATATTGGTAGTCTATCACGCCTCATTCGTTTAAATATTTTCCAAAACAAAATTTCATCAATCCCACCTTCAATTAAGGATTGCTGTGCTCTTGCAGAGTTATATATAGGGAATAATTCAGTGAGTATGTTACCAGGGGAGATTGGGGCACTTTCTCATTTAGGGACCTTAGATCTTCACTCAAATCAGTTGAAAGAGTATCCAGTTGAGGCATGCAAGTTGCATCTCTTGGTTTTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCCCAGAAATCGGTAAGATGACTACGCTGCGAAAGCTCTTGCTTGCAGGAAATCCCATACGAACTCTTCGAAGCTCACTAGTTTCTGGGCCAACTCCTGCTTTATTGAAGTTTCTTCGAAGTAGACTTCCTGAGAATGAAGATCCTGAAGCTAGTAGCACTCAGAGAGAGAATATAATTACTATGGCAGCTAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGAAAGGGCTAAGTGCTGTGCCATCAGAAGTTTGGGAATGCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTGCCTGTAGAACTTCCCTCGTGTACTTCTCTGCAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCGGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGATAATAATCCACTTAAACAGATTCCATCATATGGCTTTCAAGCAACACCCATGCTACAGGTTTTAGATCTTAGTGGTAACGTAGATTCCTTGCCAGAGCACCCAACATTTTCCAGCTTACCCCATCTGCGAGAGCTTTACCTAAGGAGAACGCGGCTACATGAAGTTCCATCATCTATTTTGGGCTTAAAGCATCTACAGATACTTGATTTGAGTCAAAATTCAATTCAATTGGTTCCAGAGGGATTGAAGAATCTTACCAACCTTACTGAGCTGGACCTATCTGATAATAACATTTCAATGCTCCCTCCACAGCTGAGTTTGCTTGAACCCAGCTTACAGGTACTGAAACTGGATGGAAATCCGCTTAGAAGCATTCGGAGGACAATCTTAGAGAAAGGAACCAAAGCTGTCCTAGCATATCTGAAGGATAAATTGACAGAGTAG 1752 41.84 MDRVLKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELHKLILAHNNIQLLDEELRNLSSLTVLNVSHNKLSELPAAIGELPVLKLLDVSFNSLMRIPEEIGSATSLVKFDCSSNRLKELPGGLGRCSDLSDLKASNNSISSLPDELANCSKLTKLDMEGNKLTMIPKILIASWTMLTELNASKNFLNGLPENIGSLSRLIRLNIFQNKISSIPPSIKDCCALAELYIGNNSVSMLPGEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTLRKLLLAGNPIRTLRSSLVSGPTPALLKFLRSRLPENEDPEASSTQRENIITMAARMSITSKELSLEGKGLSAVPSEVWECSELMKLDLSKNSLQELPVELPSCTSLQTLILSRNKIKDWPGAILKSLPNLMCLKLDNNPLKQIPSYGFQATPMLQVLDLSGNVDSLPEHPTFSSLPHLRELYLRRTRLHEVPSSILGLKHLQILDLSQNSIQLVPEGLKNLTNLTELDLSDNNISMLPPQLSLLEPSLQVLKLDGNPLRSIRRTILEKGTKAVLAYLKDKLTE 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4313624 4324147 + CmaCh16G007860.1 Cma16g00786 311384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00786 583 SUPERFAMILY L domain-like 360 563 - -
Cma16g00786 583 PRINTS Leucine-rich repeat signature 277 290 - -
Cma16g00786 583 PRINTS Leucine-rich repeat signature 521 534 - -
Cma16g00786 583 SMART LRR_typ_2 498 520 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 67 88 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 404 426 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 475 497 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 380 403 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 427 450 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 546 568 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 252 275 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 159 182 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 276 296 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 114 136 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 90 113 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 297 320 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 206 229 IPR003591 -
Cma16g00786 583 SMART LRR_typ_2 521 544 IPR003591 -
Cma16g00786 583 SUPERFAMILY L domain-like 44 314 - -
Cma16g00786 583 Gene3D Ribonuclease Inhibitor 342 465 IPR032675 -
Cma16g00786 583 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Cma16g00786 583 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 216 582 - -
Cma16g00786 583 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 131 - -
Cma16g00786 583 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 136 227 - -
Cma16g00786 583 Gene3D Ribonuclease Inhibitor 124 220 IPR032675 -
Cma16g00786 583 ProSiteProfiles Leucine-rich repeat profile. 429 450 IPR001611 GO:0005515
Cma16g00786 583 Pfam Leucine rich repeat 471 511 IPR001611 GO:0005515
Cma16g00786 583 Pfam Leucine rich repeat 405 462 IPR001611 GO:0005515
Cma16g00786 583 Pfam Leucine rich repeat 115 172 IPR001611 GO:0005515
Cma16g00786 583 Pfam Leucine rich repeat 254 310 IPR001611 GO:0005515
Cma16g00786 583 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Cma16g00786 583 SMART LRR_bac_2 90 109 - -
Cma16g00786 583 SMART LRR_bac_2 521 540 - -
Cma16g00786 583 SMART LRR_bac_2 67 86 - -
Cma16g00786 583 SMART LRR_bac_2 475 494 - -
Cma16g00786 583 SMART LRR_bac_2 136 155 - -
Cma16g00786 583 SMART LRR_bac_2 159 178 - -
Cma16g00786 583 SMART LRR_bac_2 498 517 - -
Cma16g00786 583 SMART LRR_bac_2 186 202 - -
Cma16g00786 583 SMART LRR_bac_2 380 399 - -
Cma16g00786 583 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Cma16g00786 583 PANTHER LRR RECEPTOR-LIKE KINASE 136 227 - -
Cma16g00786 583 PANTHER LRR RECEPTOR-LIKE KINASE 216 582 - -
Cma16g00786 583 PANTHER LRR RECEPTOR-LIKE KINASE 14 131 - -
Cma16g00786 583 SMART LRR_sd22_2 498 520 - -
Cma16g00786 583 SMART LRR_sd22_2 67 85 - -
Cma16g00786 583 SMART LRR_sd22_2 521 546 - -
Cma16g00786 583 Gene3D Ribonuclease Inhibitor 221 332 IPR032675 -
Cma16g00786 583 Gene3D Ribonuclease Inhibitor 466 580 IPR032675 -
Cma16g00786 583 Gene3D Ribonuclease Inhibitor 4 123 IPR032675 -
Cma16g00786 583 ProSiteProfiles Leucine-rich repeat profile. 69 90 IPR001611 GO:0005515
Cma16g00786 583 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00786 - - - bhj:120091291 987.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00786 Cma-Chr16:4313624 Cma09g01094 Cma-Chr9:5920330 8.35E-29 dispersed
Cma19g00460 Cma-Chr19:5518439 Cma16g00786 Cma-Chr16:4313624 1.35E-07 dispersed
Cma16g00786 Cma-Chr16:4313624 Cma14g01870 Cma-Chr14:13251493 7.41E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00786 Cma_Chr16 FPKM 12.761088 16.904415 14.967923 16.658401 14.937946 15.30366 17.227991 25.998154 26.39427 27.377619