Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00810 ATGGCCACCTCCGACGACGACGAAGTAGAAAAAGAATTACAAGAACACGATGGTGGCTTCTGCCGGAGCCTCTACGGAGTCGGCTCGGTTCTCGACCCGAGAGCCAAATGGGTCCGAGAATGGAACCGGGTCTTCCTCCTCGTCTCCGCCGCTGGCCTCTTCGTGGACCCTCTCTTCCTCTACACGCTCTCCATAAGCGAGTCATGGATGTGCTTGTTTGTTGATGGGTGGTTAGCCATCACCGTCACCGTCCTCCGCTGCACCGCCGACGCCTTCCACCTTTGGAACATGTGGCTCCAGCTCAAGACTGCCACAAGATACTCCTTCGCCGGTGGAGCTGGCACCGCAGCCACGCCGGAGAATAGAGGCCTTAGAGATTCCACCCCACGCGCCGTCGCTCTCCGCTACTTCAAATCCAAAAAAGGCTTCTTCTTTGATCTCTTCGTTATTCTTCCACTTCCACAGGTGGTATTATGGGTAGTAATTCCAAGAATAATGAAAGAAGGATCAGTGACATTGGTGATGACAGTTTTGCTAATAGTATTTCTATTTCAATACTTACCCAAATTGTACCACTCGGTATGCCTGCTGCGGCGCCTCCAAAACCTGTCGGGGTTCATCTTTGGCACGGTCTGGTGGGGCATTGCCCTCAATCTCATTGCTTACTTTGTTGCTGCTCACGCTGCAGGCGCATGCTGGTACCTGTTGGGTGTGCAAAGAGCAGCCAAGTGCCTTAAAGAGCAATGCAGAGCCACGAGCAGCTGTGGGGTGAGGCTGTTGTCATGCAAAGATCGTATCTTTTATGGAGCCACCAAGATGGGAATGGGGAGAGACAGTGCAAGATTTGATTGGGCGAATAACAGGCAACCGAAATTCATGTGTTTGGATACTGCTGACAACTTTAATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTGTCAACCAAAGTCGCTTGGAGAAGATCCTTTTTCCTATCTTTTGGGGTCTCATGACTCTTAGTACCTTTGGGAACTTGGAGAGCACCACGGAATGGCTGGAAGTTGTGTTCAATATCATTGTTCTCACCAGTGGACTCTTATTAGTCACCATGTTGATAGGAAATATCAAGGTGTTTTTGCATGCAACCACGTCAAAGAAACAAGGAATGCAACTAAAGATGAGGAATCTAGAGTTGTGGATGAGAAAGCGACATCTTCCACAAGGCTTCCGACAGCGTGTTCGGAACTACGAACGGCAACGTTGGGCAGCGATGCGCGGAGTTGACGAGTGCGAGATGATTAAAAACCTACCAGAAGGACTCCGGCGAGAGATAAAGTATCACCTTTGCTTGGATCTAGTTAGGCAGGTGCCATTGTTTCAACACATGGATGATCTTGTTCTTGAGAACATTTGTGACCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACCATAACAAGAGAGGGCGACCCAGTTCAAAGAATGCTGTTTGTCGTTCGAGGGCATCTCCAAAGCAGCCAAGTCTTACGCGACGGCGTCAAAAGCTGCTGCATGTTGGGGCCAGGCAACTTTAGCGGCGACGAGCTTCTATCCTGGTGTCTCCGCCGCCCCTTCATAGAGCGCCTTCCGCCGTCCTCTTGCACTTTGGTGACATTGGAGACGACGGAGGCGTTTGGGTTGGAGGCGGAGGATGTCAAGTACGTAACCCAGCACTTTCGCTACACATTCGTCAACGACAAGGTCAAACGTAGCGCCCGCTACTACTCCCCTGGGTGGCGTACTTGGGCTGCCGTTGCCATCCAGCTTGCCTGGCGTCGTTACCGCCACCGGCTTACGTTAACGTCGTTGTCGTTTATTCGGCCTCGGCGACCCTTGTCGCGGTGCTCTTCCTTGGGGGAGGATCGCCTCCGCCTCTACACGGCGTTGCTTACTTCTCCCAAGCCCAATCAGGATCACTTCGATTTTTGA 1950 51.49 MATSDDDEVEKELQEHDGGFCRSLYGVGSVLDPRAKWVREWNRVFLLVSAAGLFVDPLFLYTLSISESWMCLFVDGWLAITVTVLRCTADAFHLWNMWLQLKTATRYSFAGGAGTAATPENRGLRDSTPRAVALRYFKSKKGFFFDLFVILPLPQVVLWVVIPRIMKEGSVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGFIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRATSSCGVRLLSCKDRIFYGATKMGMGRDSARFDWANNRQPKFMCLDTADNFNYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLELWMRKRHLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRREIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEAEDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4474722 4478607 + CmaCh16G008100.1 Cma16g00810 311408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00810 649 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 646 - -
Cma16g00810 649 Gene3D Helix hairpin bin 377 443 - -
Cma16g00810 649 ProSiteProfiles cAMP/cGMP binding motif profile. 452 531 IPR000595 -
Cma16g00810 649 SUPERFAMILY Voltage-gated potassium channels 33 373 - -
Cma16g00810 649 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 4 23 646 - -
Cma16g00810 649 Pfam Ion transport protein 41 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma16g00810 649 Pfam Cyclic nucleotide-binding domain 473 560 IPR000595 -
Cma16g00810 649 CDD CAP_ED 452 558 IPR000595 -
Cma16g00810 649 SUPERFAMILY cAMP-binding domain-like 378 566 IPR018490 -
Cma16g00810 649 Gene3D Jelly Rolls 450 568 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02791 Cma-Chr4:18711935 Cma16g00810 Cma-Chr16:4474722 0 dispersed
Cma16g00810 Cma-Chr16:4474722 Cma02g00901 Cma-Chr2:5361560 3.73E-120 dispersed
Cma16g00810 Cma-Chr16:4474722 Cma20g00493 Cma-Chr20:2405631 7.33E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00810 K05391 - csv:101207531 1187.94