Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00815 ATGGTTTCTGTTGGTGAGTACAAATTTAGGAAATTGTGTTCCAATCATGGCCATGTGGAATTTGATGAGCTCCATTGTTTCAGGGGTCTAGGAGGTTGTTTTCATATAATGGATGTGCAGTTCTGTTCTACTGTTGCATTGCATTCATCTTGTTTGATGAACCTTTTAGCTTTGGGGATGCACCTGTCTGCCGCTGCCTCCGATTCCTTAACGCCTCAAAACCCATATCTCAGAGATGGCAACAGTCTGGTCTCCAGTAATGGATTATTCGAATTGGGTTTTTTCAGTCCTGGCCTGCCCAGCAACCGTTACTTGGGAATCTGGTACAAGGATCGCCGAGGTCCGACCGCCGCTTGGGTCGCCAACAGGGGAACCCCTATTAATGACTCGTCTGGTGTACTGGCGATGAACATTACAACAGGTAATCTCACACTCTACAGCCACAATTCCTCCATAATTGCTTGGTCCGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGCGGAATACCGACGATGAAAACCCCCAAAACTACTCCTGGCAAAGCTTTGATTACCCTTCTGACACCCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAAACATAACATAGAAAGAAGATTAGACGCTTGGAGGAATCCCAATGACCCATCTCCTGGGGAATTCAATTGGAGGATGGAGCTTCATGCATATCCCGAGACCGTCATGTCCAAAGGTTCCCGGAAATACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCTCTAGTAGACCCATAGCCGCAACCCCACTTCTGAATTTCAATTTTGTTGCAAATCAGGATGAGGTTTACTATCAATACTCTCTTATAAACAAGTCTCATACAGTGATGTTGGTGATGAACCAATCCGATTACAAGCGCACCATGTATTTGTGGTCTGTATCTGAGAGACGGTGGAGAGTTTACTCTTCATTACCAAGAGATACATGTGACAATTATGCTATGTGTGGTCCTTTTGGATATTGTGATATAAGGGTCCCTCCTTTTTGTAAATGTCTTGAAGGGTTTAAGCCAAAATCACCTGACAGTTGGAAGGCAGGCGAATTCGCCGATGGTTGTGAACGAAACAAAGTGATGAATTGTGGTGATGAAATTGGGTTTTCAAAGCTCAACCGTATGAAATTACCAGACACAACGCATACTTGGGTCAATAGAAGCATGAACCTTGAAGAGTGCAAGCAAACATGCTTGAGAAATTGTTCTTGTATGGCTTATTCAAATACAGATATCAGTCACGGTGGCAGTGGCTGTGCTTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGAGGCAGGAGGACAGGATTTATATGTCAGAATGCTAGCATCTGAATTAGTCAAGCTTAGGGAGTCACACAAAACAGAGAGATTCAATCTTACGGTGAAGATTTCTTTGGCTGTGGTTGCCGCCGGTAGTTTGGCTATACTTTTCATATGCATATACATGTGCAAAAAGAGATCAACCATCAAAGATGATCATGAGAACATAGAAGCTCAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGCGCCACAGATAACTTCTCGGTCAGTAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTTTATAAGGGTAAGCTTACAAATGGACAAGAGATTGCAGTAAAGAGACTTTCACAGAGTTCTGGACAGGGAATGGATGAGTTTAAGAACGAAGTAATCCTGTTCGCAAAACTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATCGAAGGAGACGAGAAAATGCTAGTTTATGAGTTTATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATAAAACACAACGTGAATTATTAGACTGGTCACAACGATACCATATTATTTGTGGCATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAACCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTCGGTCTGGCTAAAACATGCGGTGAAGATCAAACCGAAGGAGAAACGAGAAGAGTGGTTGGAACTTATGGATATATGGCACCGGAATATGCATTTGATGGACAATTCTCGGTAAAATCTGATGCATTTAGCTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGTAGAGGTTTCTCTAACTTGAATGACCAAAATCTTGTTGCATATGCATGGCGACTGTGGAAAGAAGGAAATATTGAAGAATTAATCGACGATGCCATTCGAGACACGTGCATCCTTTCGGGGGTATTCAGATGCGTCAATATCAGTTTGTTGTGTGTTCAACAAGAGCCTAACGATCGACCCACAATGTCATCAGTGGTTATGATGTTAGGGTGTGAAATTCCGTTGTTGCAACCGAAGCCACCAGGATTTTTCGTAGAAAATGAAGACATTGCAATGAAAAGTGTGTCAAGTAAAGATGAATCAATTTCAACGAATGAATTGACTATTACGCTTCCAGATCCGAGCTGCCGCCACAACGACCAAATCTACTCACAGGAGCCGTTCAATTTCCTCCTTGTTGATGTCCCCATTGTCAAGGCCGAAGAAAAATCAGTCAGCCATCCTCAACCTCAGTCGGATAATGCCGTCTGTCGCTCCATCGATATGGGCTCTTTATCTCCACCATTCCTGGTCTTTAACTTGGTCTTTTATCTCTTCACCTCTGCCGTTGCCACTGATTCCTTGACTGCTCAAAACCCATATCTCAGAGATGGGTGTACTCTGGTCTCCAGAAATGGAGTCTTCGAATTGGGTTTCTTCACTCCTGGTGTTTCGGGCCATCGCTATTTGGGAATTTGGTTTAAGAATCGCCGAGGTCCGACCTCCGTTTGGGTGGCGAACAGGAAAGCCCCAATTAATGATTCATCTGGTGTACTGGTGATGAATCTTACAACAGGTAATCTGGCGCTCAATACCCACAATTCCACCGCCGTTGTTTGGTCCGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGCGGAATACCGACGATGAAAATCCCCAAAATTACTCCTGGCAAAGCTTTGTTTCAAATAAGGATGAAGATTACTACCAATATGCTGTTGTAAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCGATTACAGCCGCGCCATGTATTTGTGGTCTGCAGCTGAGAGTCGGTGGACAGTTCACACTTCATCACCAAGAGATTTCTGTGACAATTATGCCATGTGTGGCCCCTTTGGATATTGTGATGTAACGGTAACTCCATCTTGTATATGTATTGAAGGGTTTAAGGCAAAATCACCTGATAGTTGGAAGGCAGGGGAATTTGCGGATGGTTGTGAACGAATCAAAGTGATGAATTGTGGTGATGAAGTTGGGTTTGCACCGCTCAACCAGATGAAATTACCAGACACAACGCATGCTTGGGTGAACAAAAGCATGAATCTTGAAGAGTGCAAGCAACAATGCTTGAGAAATTGTTCTTGTATGGCTTATGCTAATACAAATATCAGTGGCGGTGGCAGTGGCAGTGGCTGTGGCCTGTGGATTGGTGATCTAATTGACTTGAAGTTGATCCCGGATGCAGGGCAGGATTTATATATCAGAAGGCTAGCATCGGATTTAGTCAAGCTTAGGGAGCCACGCAAAACTGGTGGATTGAATCCTAAGGTGAAGATTGCTTTGGTTGTGATTGCTGCCGGCTTAGGTTTGGCTATCATCTTCATATGCTTATACATTTTCAAAAAGAGATCAACCTTCAAAGATGATCATGAGAAAATAGAAGGTGAAGACCTGGAGCTTCCCTTGTTTGATCTATCTTTGATAAATAGCGCCACAGATAACTTCTCCCTTAGTAATAAGCTTGGAGAAGGTGGCTTTGGGCCAGTTTATAAGGGTAAGCTTGCAAATGGACAAGAGATTGCAGTAAAGAGACTTTCACAGAGTTCTGGACAGGGAGTGAATGAGTTTAAGAACGAAGTAATCCTTATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGACGAGAAAATGCTAGTTTATGAGTATATGCCAAACAGAAGTTTGGACTTCTTTATATTTGATCAAACACAACGTCAATTATTAGTCTGGCCACAACGATACCATATTATTTGTGGCGTTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAGCCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTCGGACTGGCTAAAACTTGCGGTGAAGATCAAACCGAAGGACGAACGAAAAGAGTCGTTGGAACTTACGGATATATGGCGCCTGAATACGCTTTTGATGGACAATTCTCGGTAAAATCGGATGCATTTAGCTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAAAAGCAGAGGTTTCTGCCACTTGAATGCCCAAAATCTTATTGCATATGCATGGCGTTTGTGGAAAGAAGGGAATCCCGAAGAGTTGATCGACGAAGCCATTCGAGAAACGTGCATCATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTATTCAACAACGTCCTAACGATCGACCGACAATGTCATCAGTCGTTATGATGTTAGGGTGTGAAATTTGTTTGTCGCAACCGAAACAACCTGGCTTTTTTGTACAAAATGAAGCTATGGGAATGAAAGGTGACTCGAGTAAAGAAAAATCAACTTCAGCTAATCAAATTTCTATTTCATTCCCAGATCCAAGGTAA 4920 42.22 MVSVGEYKFRKLCSNHGHVEFDELHCFRGLGGCFHIMDVQFCSTVALHSSCLMNLLALGMHLSAAASDSLTPQNPYLRDGNSLVSSNGLFELGFFSPGLPSNRYLGIWYKDRRGPTAAWVANRGTPINDSSGVLAMNITTGNLTLYSHNSSIIAWSARLLRKVPNGVLQLLDTGNLVLRNTDDENPQNYSWQSFDYPSDTLLPGMKLGWDLKHNIERRLDAWRNPNDPSPGEFNWRMELHAYPETVMSKGSRKYVRHGPWNGVRLSSRPIAATPLLNFNFVANQDEVYYQYSLINKSHTVMLVMNQSDYKRTMYLWSVSERRWRVYSSLPRDTCDNYAMCGPFGYCDIRVPPFCKCLEGFKPKSPDSWKAGEFADGCERNKVMNCGDEIGFSKLNRMKLPDTTHTWVNRSMNLEECKQTCLRNCSCMAYSNTDISHGGSGCALWIGDLIDLKLIPEAGGQDLYVRMLASELVKLRESHKTERFNLTVKISLAVVAAGSLAILFICIYMCKKRSTIKDDHENIEAQDLELPLFDLSLINSATDNFSVSNKLGEGGFGPVYKGKLTNGQEIAVKRLSQSSGQGMDEFKNEVILFAKLQHRNLVKLLGCCIEGDEKMLVYEFMPNKSLDFFIFDKTQRELLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKPSNVLLDMDMNPKISDFGLAKTCGEDQTEGETRRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRGFSNLNDQNLVAYAWRLWKEGNIEELIDDAIRDTCILSGVFRCVNISLLCVQQEPNDRPTMSSVVMMLGCEIPLLQPKPPGFFVENEDIAMKSVSSKDESISTNELTITLPDPSCRHNDQIYSQEPFNFLLVDVPIVKAEEKSVSHPQPQSDNAVCRSIDMGSLSPPFLVFNLVFYLFTSAVATDSLTAQNPYLRDGCTLVSRNGVFELGFFTPGVSGHRYLGIWFKNRRGPTSVWVANRKAPINDSSGVLVMNLTTGNLALNTHNSTAVVWSARLLRKVPNGVLQLLDTGNLVLRNTDDENPQNYSWQSFVSNKDEDYYQYAVVNKSHTVMVVMNQSDYSRAMYLWSAAESRWTVHTSSPRDFCDNYAMCGPFGYCDVTVTPSCICIEGFKAKSPDSWKAGEFADGCERIKVMNCGDEVGFAPLNQMKLPDTTHAWVNKSMNLEECKQQCLRNCSCMAYANTNISGGGSGSGCGLWIGDLIDLKLIPDAGQDLYIRRLASDLVKLREPRKTGGLNPKVKIALVVIAAGLGLAIIFICLYIFKKRSTFKDDHEKIEGEDLELPLFDLSLINSATDNFSLSNKLGEGGFGPVYKGKLANGQEIAVKRLSQSSGQGVNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNRSLDFFIFDQTQRQLLVWPQRYHIICGVARGLMYLHQDSRLRIIHRDLKPSNVLLDMDMNPKISDFGLAKTCGEDQTEGRTKRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKKSRGFCHLNAQNLIAYAWRLWKEGNPEELIDEAIRETCIISEVLRCINISLLCIQQRPNDRPTMSSVVMMLGCEICLSQPKQPGFFVQNEAMGMKGDSSKEKSTSANQISISFPDPR 1639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4512975 4527058 + CmaCh16G008150.1 Cma16g00815 311413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00815 1639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1444 1456 IPR008271 GO:0004672|GO:0006468
Cma16g00815 1639 ProSiteProfiles Protein kinase domain profile. 1323 1607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00815 1639 CDD B_lectin 76 197 IPR001480 -
Cma16g00815 1639 CDD STKc_IRAK 1329 1593 - -
Cma16g00815 1639 Pfam S-locus glycoprotein domain 256 364 IPR000858 GO:0048544
Cma16g00815 1639 Pfam S-locus glycoprotein domain 1049 1140 IPR000858 GO:0048544
Cma16g00815 1639 CDD PAN_AP_plant 383 465 - -
Cma16g00815 1639 Pfam D-mannose binding lectin 979 1062 IPR001480 -
Cma16g00815 1639 Pfam D-mannose binding lectin 116 223 IPR001480 -
Cma16g00815 1639 ProSiteProfiles Bulb-type lectin domain profile. 931 1054 IPR001480 -
Cma16g00815 1639 PANTHER - 1056 1636 - -
Cma16g00815 1639 PANTHER - 67 857 - -
Cma16g00815 1639 PANTHER - 930 1057 - -
Cma16g00815 1639 CDD B_lectin 939 1057 IPR001480 -
Cma16g00815 1639 ProSiteProfiles Bulb-type lectin domain profile. 68 191 IPR001480 -
Cma16g00815 1639 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1056 1636 - -
Cma16g00815 1639 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 930 1057 - -
Cma16g00815 1639 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 67 857 - -
Cma16g00815 1639 SMART blect_4 74 197 IPR001480 -
Cma16g00815 1639 SMART blect_4 937 1060 IPR001480 -
Cma16g00815 1639 CDD PAN_AP_plant 1160 1243 - -
Cma16g00815 1639 ProSiteProfiles Protein kinase domain profile. 544 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00815 1639 SUPERFAMILY Protein kinase-like (PK-like) 1306 1592 IPR011009 -
Cma16g00815 1639 SMART serkin_6 544 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00815 1639 SMART serkin_6 1323 1593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00815 1639 SUPERFAMILY Protein kinase-like (PK-like) 529 845 IPR011009 -
Cma16g00815 1639 CDD STKc_IRAK 550 814 - -
Cma16g00815 1639 SUPERFAMILY alpha-D-mannose-specific plant lectins 117 228 IPR036426 -
Cma16g00815 1639 SMART ntp_6 386 466 IPR003609 -
Cma16g00815 1639 SMART ntp_6 1163 1244 IPR003609 -
Cma16g00815 1639 ProSiteProfiles PAN/Apple domain profile. 1162 1245 IPR003609 -
Cma16g00815 1639 SUPERFAMILY alpha-D-mannose-specific plant lectins 966 1083 IPR036426 -
Cma16g00815 1639 ProSiteProfiles PAN/Apple domain profile. 385 467 IPR003609 -
Cma16g00815 1639 Gene3D Transferase(Phosphotransferase) domain 1 1399 1601 - -
Cma16g00815 1639 Gene3D Transferase(Phosphotransferase) domain 1 620 818 - -
Cma16g00815 1639 Gene3D Phosphorylase Kinase; domain 1 1297 1398 - -
Cma16g00815 1639 Gene3D Phosphorylase Kinase; domain 1 517 619 - -
Cma16g00815 1639 Pfam PAN-like domain 1163 1230 IPR003609 -
Cma16g00815 1639 Pfam PAN-like domain 388 451 IPR003609 -
Cma16g00815 1639 Gene3D Hepatocyte Growth Factor 382 457 - -
Cma16g00815 1639 Pfam Protein tyrosine and serine/threonine kinase 1324 1592 IPR001245 GO:0004672|GO:0006468
Cma16g00815 1639 Pfam Protein tyrosine and serine/threonine kinase 546 813 IPR001245 GO:0004672|GO:0006468
Cma16g00815 1639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Cma16g00815 1639 MobiDBLite consensus disorder prediction 1620 1639 - -
Cma16g00815 1639 MobiDBLite consensus disorder prediction 1618 1639 - -
Cma16g00815 1639 Gene3D - 925 1058 IPR036426 -
Cma16g00815 1639 Gene3D - 61 194 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00691 Cma-Chr13:6304253 Cma16g00815 Cma-Chr16:4512975 6.25E-155 dispersed
Cma16g00815 Cma-Chr16:4512975 Cma18g00332 Cma-Chr18:1779036 1.21E-16 dispersed
Cma01g01169 Cma-Chr1:8503318 Cma16g00815 Cma-Chr16:4512975 7.73E-152 wgd
Cma13g00687 Cma-Chr13:6295714 Cma16g00815 Cma-Chr16:4512975 5.47E-49 wgd
Cma16g00815 Cma-Chr16:4512975 Cma09g00906 Cma-Chr9:4507821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69201 PF07714 PK_Tyr_Ser-Thr 7.80E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00815 - - cpep:111810431 3055.39